Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ETL60_RS14160 Genome accession   NZ_CP035414
Coordinates   2611326..2612072 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103637     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2606326..2617072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS14135 (ETL60_14135) mreC 2606732..2607604 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ETL60_RS14140 (ETL60_14140) mreB 2607635..2608648 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ETL60_RS14145 (ETL60_14145) radC 2608740..2609435 (-) 696 WP_003246034.1 DNA repair protein RadC -
  ETL60_RS14150 (ETL60_14150) maf 2609472..2610041 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ETL60_RS14155 (ETL60_14155) spoIIB 2610194..2611192 (-) 999 WP_015251545.1 stage II sporulation protein SpoIIB -
  ETL60_RS14160 (ETL60_14160) comC 2611326..2612072 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  ETL60_RS14165 (ETL60_14165) folC 2612212..2613504 (-) 1293 WP_014480460.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ETL60_RS14170 (ETL60_14170) valS 2613564..2616206 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  ETL60_RS14175 (ETL60_14175) - 2616654..2616845 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=340892 ETL60_RS14160 WP_072592551.1 2611326..2612072(-) (comC) [Bacillus subtilis strain SRCM103637]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=340892 ETL60_RS14160 WP_072592551.1 2611326..2612072(-) (comC) [Bacillus subtilis strain SRCM103637]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGAACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTTTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment