Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F4V42_RS04610 Genome accession   NZ_CP044140
Coordinates   652382..652987 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O157 strain AR-0430     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 647382..657987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F4V42_RS04590 aes 647523..648482 (+) 960 WP_000801803.1 acetyl esterase -
  F4V42_RS04595 hemH 648479..649441 (-) 963 WP_001250105.1 ferrochelatase -
  F4V42_RS04600 adk 649573..650217 (-) 645 WP_001220233.1 adenylate kinase -
  F4V42_RS04605 htpG 650398..652272 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  F4V42_RS04610 recR 652382..652987 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  F4V42_RS04615 ybaB 652987..653316 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  F4V42_RS04620 dnaX 653369..655300 (-) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  F4V42_RS04625 apt 655429..655980 (-) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  F4V42_RS04630 ybaN 656133..656510 (-) 378 WP_001188905.1 DUF454 family protein -
  F4V42_RS04635 priC 656580..657107 (+) 528 WP_000844886.1 primosomal replication protein N'' -
  F4V42_RS04640 rsmS 657121..657285 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=340884 F4V42_RS04610 WP_001195025.1 652382..652987(-) (recR) [Escherichia coli O157 strain AR-0430]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=340884 F4V42_RS04610 WP_001195025.1 652382..652987(-) (recR) [Escherichia coli O157 strain AR-0430]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment