Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   F5K02_RS20525 Genome accession   NZ_CP044132
Coordinates   4123932..4124726 (-) Length   264 a.a.
NCBI ID   WP_007407895.1    Uniprot ID   A7ZAN9
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 4118932..4129726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS20505 (F5K02_20700) - 4119276..4120283 (-) 1008 WP_241457801.1 ThiF family adenylyltransferase -
  F5K02_RS20510 (F5K02_20705) - 4120515..4121933 (-) 1419 WP_094032956.1 HAMP domain-containing sensor histidine kinase -
  F5K02_RS20515 (F5K02_20710) - 4121930..4122139 (-) 210 WP_025285567.1 winged helix-turn-helix domain-containing protein -
  F5K02_RS20520 (F5K02_20715) htrA 4122649..4123845 (-) 1197 WP_007614967.1 S1C family serine protease Regulator
  F5K02_RS20525 (F5K02_20720) vicX 4123932..4124726 (-) 795 WP_007407895.1 MBL fold metallo-hydrolase Regulator
  F5K02_RS20530 (F5K02_20725) yycI 4124741..4125580 (-) 840 WP_094032957.1 two-component system regulatory protein YycI -
  F5K02_RS20535 (F5K02_20730) yycH 4125567..4126925 (-) 1359 WP_007407897.1 two-component system activity regulator YycH -
  F5K02_RS20540 (F5K02_20735) walK 4126915..4128750 (-) 1836 WP_004393106.1 cell wall metabolism sensor histidine kinase WalK -
  F5K02_RS20545 (F5K02_20740) walR 4128757..4129464 (-) 708 WP_004393104.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29116.20 Da        Isoelectric Point: 6.0280

>NTDB_id=340873 F5K02_RS20525 WP_007407895.1 4123932..4124726(-) (vicX) [Bacillus amyloliquefaciens strain ZKY01]
MGLQFSVLASGSTGNAFYLETEEHSFLVDAGLSGKAMDGLMEKIGRKIDDVDGIFVTHEHSDHIKGLGVIARKYGLPVYA
NEKTWKAMENQIGKLDTGQKFLFPMESVKSFGGLDVESFGVSHDAAEPMFYVFHYQGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDGTSRIYLAHLSQDNNMKELARMSVQQTLAAK
GFVAGETFQLFDTDPKIPTPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=340873 F5K02_RS20525 WP_007407895.1 4123932..4124726(-) (vicX) [Bacillus amyloliquefaciens strain ZKY01]
ATGGGCTTGCAATTTAGCGTGCTTGCGAGCGGGAGTACCGGAAACGCGTTTTATCTGGAGACAGAGGAGCACTCTTTTCT
GGTGGATGCCGGCCTGAGCGGTAAAGCGATGGACGGGCTGATGGAGAAAATCGGCCGCAAGATAGACGACGTCGACGGCA
TCTTTGTCACTCACGAGCACAGCGACCATATTAAAGGGCTCGGCGTCATTGCGAGAAAGTACGGACTTCCCGTCTACGCC
AATGAAAAGACGTGGAAAGCGATGGAGAATCAGATCGGCAAGCTGGATACCGGACAAAAGTTTCTGTTCCCGATGGAAAG
CGTGAAATCCTTCGGCGGGCTTGATGTTGAGTCATTCGGCGTCTCTCATGACGCGGCCGAGCCGATGTTTTATGTTTTCC
ACTACCAGGGCAGAAAGCTCGCGCTGATGACGGACACCGGGTATGTGAGCGACAGAATGAAAGGCATTATCCGTTCGGCC
AATGTGTTTGTGTTTGAAAGCAACCATGATGTCGGCATGCTGCAAATGGGCAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGCGATGTCGGCCACGTCTCCAATGAAGACGCGGCGCTCGCCATGACTGATGTCATCGGCGACGGCACATCGCGCA
TCTATTTGGCGCATCTGAGCCAAGACAACAATATGAAGGAACTGGCGAGAATGTCCGTGCAGCAGACATTGGCTGCGAAA
GGATTTGTCGCCGGGGAAACGTTTCAGTTATTTGATACCGATCCGAAAATCCCGACGCCGCTGTGCGCCGTGTAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZAN9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

52.852

99.621

0.527

Multiple sequence alignment