Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ETL60_RS12390 Genome accession   NZ_CP035414
Coordinates   2310008..2310811 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103637     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2305008..2315811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS12365 (ETL60_12365) glpQB 2306146..2306877 (-) 732 WP_087614616.1 glycerophosphodiester phosphodiesterase -
  ETL60_RS12370 (ETL60_12370) yqiI 2306956..2307576 (-) 621 WP_087614617.1 N-acetylmuramoyl-L-alanine amidase -
  ETL60_RS12375 (ETL60_12375) - 2307596..2307892 (-) 297 WP_014480225.1 hypothetical protein -
  ETL60_RS12380 (ETL60_12380) - 2308200..2308352 (+) 153 WP_121590947.1 hypothetical protein -
  ETL60_RS12385 (ETL60_12385) yqiG 2308425..2309543 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ETL60_RS12390 (ETL60_12390) spo0A 2310008..2310811 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ETL60_RS12400 (ETL60_12400) spoIVB 2311087..2312367 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  ETL60_RS12405 (ETL60_12405) recN 2312542..2314272 (-) 1731 WP_014480229.1 DNA repair protein RecN Machinery gene
  ETL60_RS12410 (ETL60_12410) argR 2314309..2314758 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ETL60_RS12415 (ETL60_12415) yqxC 2314856..2315701 (-) 846 WP_031600677.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=340873 ETL60_RS12390 WP_003226427.1 2310008..2310811(-) (spo0A) [Bacillus subtilis strain SRCM103637]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=340873 ETL60_RS12390 WP_003226427.1 2310008..2310811(-) (spo0A) [Bacillus subtilis strain SRCM103637]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment