Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   F5K02_RS20395 Genome accession   NZ_CP044132
Coordinates   4097608..4098063 (-) Length   151 a.a.
NCBI ID   WP_254922245.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4092608..4103063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS20975 - 4092651..4092773 (-) 123 WP_254922244.1 hypothetical protein -
  F5K02_RS20365 (F5K02_20560) - 4092925..4094604 (-) 1680 WP_064115206.1 phage/plasmid primase, P4 family -
  F5K02_RS20370 (F5K02_20565) - 4094766..4095320 (-) 555 WP_064115205.1 hypothetical protein -
  F5K02_RS20375 (F5K02_20570) - 4095320..4095784 (-) 465 WP_094032946.1 hypothetical protein -
  F5K02_RS20380 (F5K02_20575) - 4096008..4096970 (-) 963 WP_064115203.1 hypothetical protein -
  F5K02_RS20385 (F5K02_20580) - 4097039..4097275 (-) 237 WP_064115202.1 hypothetical protein -
  F5K02_RS20390 (F5K02_20585) - 4097272..4097595 (-) 324 WP_064115201.1 hypothetical protein -
  F5K02_RS20395 (F5K02_20590) ysxA/radC 4097608..4098063 (-) 456 WP_254922245.1 DNA repair protein RadC Machinery gene
  F5K02_RS20400 (F5K02_20595) - 4098170..4099408 (-) 1239 WP_064115199.1 DNA cytosine methyltransferase -
  F5K02_RS20980 (F5K02_20600) - 4099628..4100539 (+) 912 WP_277625810.1 HNH endonuclease -
  F5K02_RS20410 (F5K02_20605) rlmH 4100615..4101094 (-) 480 WP_088037193.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  F5K02_RS20415 (F5K02_20610) - 4101175..4101345 (-) 171 WP_004393147.1 CxxH/CxxC protein -
  F5K02_RS20420 - 4101499..4101669 (-) 171 WP_007407875.1 hypothetical protein -
  F5K02_RS20425 (F5K02_20620) - 4101957..4102652 (-) 696 WP_039063862.1 hypothetical protein -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16746.49 Da        Isoelectric Point: 9.8644

>NTDB_id=340871 F5K02_RS20395 WP_254922245.1 4097608..4098063(-) (ysxA/radC) [Bacillus amyloliquefaciens strain ZKY01]
MLKMKSAKRVNIVSVKLVRESSILYKKRSIRSPEDAYELLKSFLEDKDREHFIVVNLDTKNQPVSINVCHIGSLNASIVS
PREVMKSAVLSSAASIMVAHNHPSGGTTPSREDVDVTKRLAEVGKLMGIELLDHLIIGEGKYTSLKEKGYI

Nucleotide


Download         Length: 456 bp        

>NTDB_id=340871 F5K02_RS20395 WP_254922245.1 4097608..4098063(-) (ysxA/radC) [Bacillus amyloliquefaciens strain ZKY01]
GTGTTAAAGATGAAAAGTGCAAAAAGAGTTAACATTGTATCTGTAAAACTGGTAAGAGAATCTAGTATTCTCTATAAGAA
AAGAAGTATCCGGTCTCCGGAGGATGCGTATGAATTACTTAAAAGTTTCCTAGAGGACAAAGACCGAGAGCACTTCATTG
TTGTAAACTTAGACACCAAGAACCAACCAGTATCGATAAATGTCTGCCATATTGGTAGCTTAAACGCCAGCATCGTTAGT
CCTCGTGAGGTTATGAAATCAGCTGTCTTGTCATCTGCTGCGAGCATCATGGTAGCTCATAATCACCCTTCTGGTGGAAC
CACTCCATCAAGAGAAGACGTGGATGTTACAAAACGTCTTGCTGAAGTAGGCAAGCTGATGGGTATTGAGCTTCTGGACC
ATCTTATTATTGGAGAGGGAAAATACACATCCTTGAAAGAAAAAGGATATATATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(30-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

57.377

80.795

0.464

Multiple sequence alignment