Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ETL60_RS08980 Genome accession   NZ_CP035414
Coordinates   1701132..1701911 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM103637     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1696132..1706911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS08960 (ETL60_08960) trmFO 1696825..1698132 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ETL60_RS08965 (ETL60_08965) xerC 1698200..1699114 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ETL60_RS08970 (ETL60_08970) clpQ 1699127..1699672 (+) 546 WP_046160401.1 ATP-dependent protease subunit ClpQ -
  ETL60_RS08975 (ETL60_08975) hslU 1699680..1701092 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  ETL60_RS08980 (ETL60_08980) codY 1701132..1701911 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ETL60_RS08985 (ETL60_08985) flgB 1702291..1702680 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ETL60_RS08990 (ETL60_08990) flgC 1702680..1703132 (+) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  ETL60_RS08995 (ETL60_08995) fliE 1703143..1703463 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ETL60_RS09000 (ETL60_09000) fliF 1703509..1705119 (+) 1611 WP_087614551.1 flagellar basal-body MS-ring/collar protein FliF -
  ETL60_RS09005 (ETL60_09005) fliG 1705132..1706148 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ETL60_RS09010 (ETL60_09010) fliH 1706141..1706893 (+) 753 WP_183163628.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=340869 ETL60_RS08980 WP_003220850.1 1701132..1701911(+) (codY) [Bacillus subtilis strain SRCM103637]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=340869 ETL60_RS08980 WP_003220850.1 1701132..1701911(+) (codY) [Bacillus subtilis strain SRCM103637]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment