Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   F5K02_RS20130 Genome accession   NZ_CP044132
Coordinates   4040036..4040725 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4035036..4045725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS20110 (F5K02_20300) - 4035941..4036288 (-) 348 WP_004393256.1 YxeA family protein -
  F5K02_RS20115 (F5K02_20305) yxdM 4036302..4038170 (-) 1869 WP_241457791.1 ABC transporter permease YxdM -
  F5K02_RS20120 (F5K02_20310) yxdL 4038145..4038918 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  F5K02_RS20125 (F5K02_20315) yxdK 4039062..4040039 (-) 978 WP_020958066.1 two-component system sensor histidine kinase YxdK -
  F5K02_RS20130 (F5K02_20320) braR 4040036..4040725 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  F5K02_RS20135 (F5K02_20325) fba 4040833..4041705 (-) 873 WP_041482478.1 class II fructose-1,6-bisphosphate aldolase -
  F5K02_RS20140 (F5K02_20330) iolI 4041708..4042550 (-) 843 WP_012118841.1 2-keto-myo-inositol isomerase -
  F5K02_RS20145 (F5K02_20335) - 4042638..4043507 (-) 870 WP_007407833.1 sugar phosphate isomerase/epimerase -
  F5K02_RS20150 (F5K02_20340) - 4043527..4044561 (-) 1035 WP_020958069.1 Gfo/Idh/MocA family oxidoreductase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=340869 F5K02_RS20130 WP_004393241.1 4040036..4040725(-) (braR) [Bacillus amyloliquefaciens strain ZKY01]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=340869 F5K02_RS20130 WP_004393241.1 4040036..4040725(-) (braR) [Bacillus amyloliquefaciens strain ZKY01]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAAGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTACGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
TATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAATTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393

Multiple sequence alignment