Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ETL60_RS08000 Genome accession   NZ_CP035414
Coordinates   1504798..1505373 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103637     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499798..1510373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS07970 (ETL60_07970) dapD 1499986..1500696 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ETL60_RS07975 (ETL60_07975) dapI 1500766..1501890 (+) 1125 WP_043857415.1 N-acetyldiaminopimelate deacetylase -
  ETL60_RS07980 (ETL60_07980) ykuS 1501952..1502197 (+) 246 WP_003232382.1 YkuS family protein -
  ETL60_RS07985 (ETL60_07985) mscT 1502234..1503037 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  ETL60_RS07990 (ETL60_07990) ahpA 1503274..1503816 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  ETL60_RS07995 (ETL60_07995) ykuV 1503886..1504332 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  ETL60_RS08000 (ETL60_08000) rok 1504798..1505373 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  ETL60_RS08005 (ETL60_08005) cse15 1505414..1506379 (-) 966 WP_021479381.1 spore protein Cse15 -
  ETL60_RS08010 (ETL60_08010) mobA 1506516..1507115 (+) 600 WP_087614541.1 molybdenum cofactor guanylyltransferase -
  ETL60_RS08015 (ETL60_08015) moeB 1507166..1508185 (+) 1020 WP_014479671.1 molybdopterin-synthase adenylyltransferase MoeB -
  ETL60_RS08020 (ETL60_08020) glp 1508203..1509495 (+) 1293 WP_014479672.1 gephyrin-like molybdotransferase Glp -
  ETL60_RS08025 (ETL60_08025) mobB 1509456..1509977 (+) 522 WP_014479673.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=340866 ETL60_RS08000 WP_003232378.1 1504798..1505373(+) (rok) [Bacillus subtilis strain SRCM103637]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=340866 ETL60_RS08000 WP_003232378.1 1504798..1505373(+) (rok) [Bacillus subtilis strain SRCM103637]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment