Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ETL60_RS05795 Genome accession   NZ_CP035414
Coordinates   1106531..1107109 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103637     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1101531..1112109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL60_RS05775 (ETL60_05775) hemAT 1102042..1103340 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  ETL60_RS05780 (ETL60_05780) comW 1103479..1105008 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  ETL60_RS05785 (ETL60_05785) yhxC 1105120..1105977 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ETL60_RS05790 (ETL60_05790) yhzC 1106005..1106238 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ETL60_RS05795 (ETL60_05795) comK 1106531..1107109 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  ETL60_RS05800 (ETL60_05800) yhxD 1107156..1108055 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ETL60_RS05805 (ETL60_05805) yhjA 1108272..1108541 (+) 270 WP_029726293.1 excalibur calcium-binding domain-containing protein -
  ETL60_RS05810 (ETL60_05810) yhjB 1108585..1110054 (-) 1470 WP_046160243.1 sodium:solute symporter -
  ETL60_RS05815 (ETL60_05815) yhjC 1110051..1110251 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ETL60_RS05820 (ETL60_05820) - 1110450..1110821 (-) 372 WP_046160244.1 hypothetical protein -
  ETL60_RS05825 (ETL60_05825) yhjE 1110973..1111596 (+) 624 WP_014479375.1 TVP38/TMEM64 family protein -
  ETL60_RS05830 (ETL60_05830) lepB 1111598..1112104 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=340853 ETL60_RS05795 WP_029317573.1 1106531..1107109(+) (comK) [Bacillus subtilis strain SRCM103637]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=340853 ETL60_RS05795 WP_029317573.1 1106531..1107109(+) (comK) [Bacillus subtilis strain SRCM103637]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment