Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   F5K02_RS17095 Genome accession   NZ_CP044132
Coordinates   3440699..3443014 (-) Length   771 a.a.
NCBI ID   WP_094032486.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3435699..3448014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS17085 (F5K02_17225) cysI 3436973..3438688 (-) 1716 WP_094032484.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  F5K02_RS17090 (F5K02_17230) - 3438716..3440524 (-) 1809 WP_094032485.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  F5K02_RS17095 (F5K02_17235) helD 3440699..3443014 (-) 2316 WP_094032486.1 RNA polymerase recycling motor HelD Machinery gene
  F5K02_RS17100 (F5K02_17240) - 3443188..3443796 (-) 609 WP_007410017.1 trimeric intracellular cation channel family protein -
  F5K02_RS17105 (F5K02_17245) - 3444019..3444819 (+) 801 WP_094032487.1 zinc-dependent metalloprotease -
  F5K02_RS17110 (F5K02_17250) - 3444853..3445272 (-) 420 WP_007410015.1 disulfide oxidoreductase -
  F5K02_RS17115 (F5K02_17255) - 3445262..3445933 (-) 672 WP_085342319.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 88174.29 Da        Isoelectric Point: 6.6488

>NTDB_id=340852 F5K02_RS17095 WP_094032486.1 3440699..3443014(-) (helD) [Bacillus amyloliquefaciens strain ZKY01]
MAKRDKEWKEEQERINFVMKELEQKQTHLEASSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIKKLKTSPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLAAVAYKASSAFQAMIDRYACSLSGSGLMCKQISFRGDILISKERIEDYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGADEKPDHWQSIGALTRNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
SIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAERYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVL
RTDTENARRKQLADTIRELRQKGWETVAVICKTAAEAKKVFQTVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAVQYKSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=340852 F5K02_RS17095 WP_094032486.1 3440699..3443014(-) (helD) [Bacillus amyloliquefaciens strain ZKY01]
ATGGCAAAACGTGATAAAGAGTGGAAAGAAGAGCAGGAAAGAATCAATTTTGTCATGAAGGAACTGGAACAGAAACAAAC
TCATCTTGAAGCCTCATCGGGCGGATTGAAGCAGGATATTGTCGGGCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGACGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCAAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCCTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTGATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTATGAAGTTCCCGAAGAA
ACGATAGAGGGAGACATCACACTGAAGCGGCAGTTTATCATTAAAAACGGTACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGCGGCCATTCCGGACAGCATATGAAAAACATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGGGATGAAAAAAGCAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGTCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTCAACAGTTATGTTTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCTACCTTTC
AGGAATATATCATCCGCCGGCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATACTGCCTGACTGAA
CAAAATCAGGACGCACTTTCCGTAAGGCTCGCAGCCGTTGCTTACAAAGCGTCATCAGCTTTCCAGGCCATGATTGACCG
CTATGCCTGCTCGCTTTCCGGCTCGGGTCTGATGTGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCAAAAGAAC
GGATTGAAGACTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACAGCGGAATGGCTTCTC
GCGGAAATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGAGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGAACCTGCATTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATTATCGTCGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGCATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGATGAAAAGCCCGATCATTGGCAGAGCATCGGCGCTTTGAC
CAGAAACGCATTTGCAGAACGGTCACTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGTTAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACGTATATACAA
AGCATCTTCCCGGCGGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCACACCATTACGGGCCCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAGGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTTTTG
CGGACGGATACAGAAAATGCGCGGCGGAAACAATTGGCGGATACAATCCGGGAGCTCAGACAAAAAGGCTGGGAGACGGT
CGCCGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTGTTTCAGACAGTCAGCGCCGAGAGCGGTGTCCGCTTGATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTGTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATTGCCGCTGACGCCTCTGCTGTCCAGTACAAAAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGCGAT
GCATCATCTGACCGTATTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTGTAA

Domains

Predicted by InterProScan.

AAA domain (AAA_19)

(217-580)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

UvrD-like helicase C-terminal domain (UvrD_C)

(601-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

66.753

99.87

0.667