Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   F5K02_RS16535 Genome accession   NZ_CP044132
Coordinates   3333338..3334468 (-) Length   376 a.a.
NCBI ID   WP_064115957.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3328338..3339468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS16515 (F5K02_16625) - 3328438..3329289 (-) 852 WP_014418802.1 DUF72 domain-containing protein -
  F5K02_RS16520 (F5K02_16630) - 3329316..3329669 (-) 354 WP_031378393.1 hypothetical protein -
  F5K02_RS16525 (F5K02_16635) - 3329743..3331107 (-) 1365 WP_095352682.1 allantoinase -
  F5K02_RS16530 (F5K02_16640) - 3331287..3332882 (+) 1596 WP_064107697.1 PucR family transcriptional regulator -
  F5K02_RS16535 (F5K02_16645) rapC 3333338..3334468 (-) 1131 WP_064115957.1 Rap family tetratricopeptide repeat protein Regulator
  F5K02_RS16540 (F5K02_16655) - 3334902..3336035 (-) 1134 WP_015418150.1 hypothetical protein -
  F5K02_RS16545 (F5K02_16660) - 3336092..3337288 (-) 1197 WP_015418151.1 tetracycline resistance MFS efflux pump -
  F5K02_RS16550 (F5K02_16665) - 3337410..3338663 (-) 1254 WP_015418152.1 alanine--glyoxylate aminotransferase family protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44355.74 Da        Isoelectric Point: 6.3556

>NTDB_id=340847 F5K02_RS16535 WP_064115957.1 3333338..3334468(-) (rapC) [Bacillus amyloliquefaciens strain ZKY01]
MSSVLPSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEINEMEEDEYLLIYYTLMKFRHQLMLDYLEPVTTRVRPTIDE
LLETIEASNKGISGLLCYYSLFFRGMYEFDQKQYVKAIGFYREAEKQLVHVHDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYDQYELYKVRKIQCLFVISGNYVDFKRFEKSLPHLEKALELSKQVNNNERLLSSAYYNIGKNYGDLEEYSKAE
IYLKKAAEISEKYKLGNLPHSLFTYAKLLFKQGKTSEAIQISKKGLSSAIYQGDKLFESLQKYLEALYINAIDQMGIKKT
IDYLEKNKNYSYVEDIALDTAAVYAESKQYDKSYFYHQKMIQTQKQIQRGECLYEF

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=340847 F5K02_RS16535 WP_064115957.1 3333338..3334468(-) (rapC) [Bacillus amyloliquefaciens strain ZKY01]
GTGAGTTCTGTTTTACCATCATCGGAGGTTGGCGTTAAGATTAATGAATGGTACAAAATGATACGTCAGTTCAGTGTTCC
GGATGCGGAGATTTTGAAAGCGGAAGTGGAACAAGAAATAAATGAGATGGAAGAAGACGAGTATCTACTGATTTACTACA
CCCTCATGAAATTCCGCCATCAGCTTATGCTGGATTATTTAGAACCGGTGACTACCCGTGTGAGACCGACAATTGACGAG
CTGCTGGAAACAATCGAAGCATCAAATAAAGGAATTTCCGGCCTGCTGTGCTATTATTCTTTATTTTTCCGCGGCATGTA
TGAATTTGATCAAAAGCAGTATGTAAAGGCGATCGGCTTTTATAGAGAGGCTGAAAAACAACTCGTTCATGTGCATGATG
AAATTGAGAGAGCGGAGTTTCATTTTAAACTGGCTGAAGCATATTACGGTATGAAACAAAGCCACGTCTCCATGCATCAC
GTAAAGCAAGCGCTCGATATTTACGATCAGTATGAGTTGTATAAAGTCCGGAAAATTCAATGTCTATTTGTCATATCAGG
AAATTATGTTGACTTTAAACGCTTTGAAAAAAGTTTGCCGCATTTAGAAAAAGCTTTAGAGTTGTCGAAACAAGTAAACA
ATAATGAAAGGCTGCTCAGTTCTGCTTATTACAACATAGGAAAGAATTACGGAGACCTGGAAGAATACAGTAAAGCTGAA
ATCTACTTAAAAAAAGCAGCGGAGATATCCGAAAAGTATAAATTGGGTAACCTTCCGCATTCCTTGTTTACATACGCAAA
GCTTCTATTTAAACAAGGGAAAACAAGCGAGGCGATTCAAATCAGCAAAAAGGGACTTTCATCAGCGATATATCAAGGGG
ATAAGCTGTTTGAATCTCTGCAAAAATATTTGGAGGCTTTATATATTAATGCAATAGACCAAATGGGAATCAAAAAAACA
ATTGATTACCTTGAGAAAAATAAAAACTATTCGTATGTAGAAGATATTGCTCTTGATACGGCTGCTGTTTATGCAGAGTC
AAAGCAATATGACAAATCTTATTTTTATCATCAAAAAATGATTCAAACGCAAAAACAAATTCAGAGGGGAGAATGCCTGT
ATGAATTTTAG

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(193-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.591

100

0.449
  rapF Bacillus subtilis subsp. subtilis str. 168

40.106

100

0.404