Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   F5K02_RS15430 Genome accession   NZ_CP044132
Coordinates   3131638..3132333 (-) Length   231 a.a.
NCBI ID   WP_014418686.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3126638..3137333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS15410 (F5K02_15505) - 3127019..3127738 (-) 720 WP_032871662.1 TIGR02206 family membrane protein -
  F5K02_RS15415 (F5K02_15510) - 3127846..3129786 (-) 1941 WP_043021696.1 ABC transporter permease -
  F5K02_RS15420 (F5K02_15515) - 3129783..3130538 (-) 756 WP_015240420.1 ABC transporter ATP-binding protein -
  F5K02_RS15425 (F5K02_15520) - 3130641..3131645 (-) 1005 WP_094032153.1 sensor histidine kinase -
  F5K02_RS15430 (F5K02_15525) braR 3131638..3132333 (-) 696 WP_014418686.1 response regulator transcription factor Regulator
  F5K02_RS15435 (F5K02_15530) - 3132397..3133707 (-) 1311 WP_015240422.1 FtsX-like permease family protein -
  F5K02_RS15440 (F5K02_15535) - 3133697..3134392 (-) 696 WP_007408816.1 ABC transporter ATP-binding protein -
  F5K02_RS15445 (F5K02_15540) - 3134408..3135364 (-) 957 WP_094032152.1 ABC transporter permease -
  F5K02_RS15450 (F5K02_15545) - 3135401..3136387 (-) 987 WP_039254158.1 ABC transporter permease -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26839.08 Da        Isoelectric Point: 7.1196

>NTDB_id=340841 F5K02_RS15430 WP_014418686.1 3131638..3132333(-) (braR) [Bacillus amyloliquefaciens strain ZKY01]
MFHILLIEDDNTLFHEMKERLTGWSFAVHGIKDFSRVIREFSEIKPDLVIIDVQLPKFDGFHWCRMIRSQSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAVFRRVHQYGTEPALMKRWCGAVIDTETNTVSRKNGSVELTKNEMLI
LKLLAEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDQLGIGKMIETKVGQGYIAKEEDGLYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=340841 F5K02_RS15430 WP_014418686.1 3131638..3132333(-) (braR) [Bacillus amyloliquefaciens strain ZKY01]
ATGTTTCACATTTTGTTAATAGAAGATGATAACACTTTGTTTCATGAGATGAAAGAGAGATTAACGGGCTGGTCATTTGC
GGTGCACGGAATAAAAGATTTCAGCCGGGTCATCCGGGAGTTTTCCGAAATTAAGCCTGATTTGGTGATCATTGATGTAC
AGCTGCCGAAATTTGACGGCTTTCATTGGTGCAGAATGATACGCTCCCAATCAAACGTGCCGATTCTCTTTTTGTCCTCG
CGCGATCATCCCGCGGATATGGTCATGTCGATGCAGCTCGGGGCAGATGATTTTATTCAGAAGCCTTTTCACTTTGATGT
GTTAATCGCGAAAATACAGGCGGTGTTCCGCCGTGTGCATCAATACGGCACAGAACCGGCGCTGATGAAAAGATGGTGCG
GGGCGGTCATTGACACAGAAACCAACACGGTCAGCCGTAAAAACGGTTCGGTCGAGCTGACCAAAAACGAAATGCTGATC
TTAAAACTGCTGGCTGAGCAGAAAAATAAAATCGTCAGCAGGGAAGAACTCATCAGAAGCCTATGGAATGATGAGCGTTT
CGTCAGTGATAATACGCTGACGGTGAATGTCAACCGGCTGCGGAAAAAACTCGATCAATTAGGCATCGGGAAAATGATTG
AAACCAAGGTGGGGCAGGGATACATCGCAAAGGAAGAAGACGGTCTTTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.639

94.805

0.385