Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ETL58_RS14510 Genome accession   NZ_CP035413
Coordinates   2752392..2753138 (-) Length   248 a.a.
NCBI ID   WP_101172351.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2747392..2758138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS14485 (ETL58_14485) mreC 2747798..2748670 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  ETL58_RS14490 (ETL58_14490) mreB 2748701..2749714 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ETL58_RS14495 (ETL58_14495) radC 2749806..2750501 (-) 696 WP_003246034.1 DNA repair protein RadC -
  ETL58_RS14500 (ETL58_14500) maf 2750538..2751107 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ETL58_RS14505 (ETL58_14505) spoIIB 2751260..2752258 (-) 999 WP_029318188.1 stage II sporulation protein SpoIIB -
  ETL58_RS14510 (ETL58_14510) comC 2752392..2753138 (-) 747 WP_101172351.1 A24 family peptidase Machinery gene
  ETL58_RS14515 (ETL58_14515) folC 2753281..2754573 (-) 1293 WP_029727116.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ETL58_RS14520 (ETL58_14520) valS 2754634..2757276 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  ETL58_RS14525 (ETL58_14525) - 2757722..2757913 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=340813 ETL58_RS14510 WP_101172351.1 2752392..2753138(-) (comC) [Bacillus subtilis strain SRCM103629]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=340813 ETL58_RS14510 WP_101172351.1 2752392..2753138(-) (comC) [Bacillus subtilis strain SRCM103629]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTGACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment