Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   F5K02_RS12220 Genome accession   NZ_CP044132
Coordinates   2466151..2467641 (-) Length   496 a.a.
NCBI ID   WP_094032278.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2461151..2472641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS12190 (F5K02_12245) gudB 2461228..2462502 (-) 1275 WP_003153413.1 NAD-specific glutamate dehydrogenase -
  F5K02_RS12195 (F5K02_12250) - 2462663..2463247 (-) 585 WP_003153412.1 genetic competence negative regulator -
  F5K02_RS12200 (F5K02_12255) - 2463399..2464187 (-) 789 WP_012117876.1 metallophosphoesterase -
  F5K02_RS12205 (F5K02_12260) - 2464274..2464732 (-) 459 WP_007409443.1 YpbF family protein -
  F5K02_RS12210 (F5K02_12265) - 2464801..2465571 (-) 771 WP_241457521.1 LysM peptidoglycan-binding domain-containing protein -
  F5K02_RS12215 (F5K02_12270) - 2465549..2466136 (-) 588 WP_007409441.1 CPBP family intramembrane glutamic endopeptidase -
  F5K02_RS12220 (F5K02_12275) recS 2466151..2467641 (-) 1491 WP_094032278.1 ATP-dependent DNA helicase RecQ Machinery gene
  F5K02_RS12225 (F5K02_12280) - 2467634..2468692 (-) 1059 WP_094032277.1 helix-turn-helix domain-containing protein -
  F5K02_RS12230 (F5K02_12285) - 2468961..2469209 (+) 249 WP_003153403.1 ferredoxin -
  F5K02_RS12235 (F5K02_12290) - 2469351..2469923 (-) 573 WP_015417737.1 ECF transporter S component -
  F5K02_RS12240 (F5K02_12295) serA 2470412..2471989 (+) 1578 WP_064115481.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55908.91 Da        Isoelectric Point: 6.2481

>NTDB_id=340809 F5K02_RS12220 WP_094032278.1 2466151..2467641(-) (recS) [Bacillus amyloliquefaciens strain ZKY01]
MTELHKALSRYFGLHSFKKGQEEIMTSVLQKKDTIAMLPTGGGKSLCYQLPGYMMDGLVLIISPLLSLMEDQVQQLKAKG
EKRVAALNSMLNSAERHFILSNISRYKFLYMSPEALSSPYVLNRLKNVPVSLFVIDEAHCISEWGHDFRPDYSKLGPFRQ
ALGKPPVLALTATATKETLRDVTDVLGLEHAVRHLYSVNRPNILLAAEHLADNTEKISRLTELAEKLEGPGIIYCPTRKW
AEELAAELNEKTGKRTDYYHGGMDTGDRILIQQQFIHNQLDCICCTNAFGMGVDKSDIRFVIHFYPPQTAEAFMQEIGRA
GRDGSPSVSILLRAPGDTELQQQIIQTESLSDYDLEGILAVIRDAGTGDERKLRDVLINKGVQETQARTAVHLYLQGKTT
KDQLQEELTSRVEKKLRKMNRFSALLERKECIREALLSYFDEPYEPDGQTGQCCSSCGLDLAPYEQKGERKNMERFEDWK
LELGRIFGSESAGEFS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=340809 F5K02_RS12220 WP_094032278.1 2466151..2467641(-) (recS) [Bacillus amyloliquefaciens strain ZKY01]
ATGACTGAGCTGCATAAAGCTTTATCCAGGTATTTTGGTTTGCATTCCTTTAAAAAAGGGCAGGAAGAGATTATGACTAG
CGTGCTCCAAAAAAAAGATACGATCGCCATGCTTCCGACCGGCGGGGGAAAATCATTATGCTATCAGCTCCCGGGTTACA
TGATGGACGGGCTGGTGCTGATTATTTCACCGCTTCTATCATTAATGGAAGATCAGGTGCAGCAGCTGAAAGCGAAAGGA
GAAAAGCGGGTTGCTGCATTAAACAGCATGCTGAATTCCGCAGAGCGGCATTTTATTCTCAGCAACATCAGCAGGTATAA
ATTTCTCTATATGTCTCCTGAAGCCCTTTCTTCACCTTATGTACTGAACCGTTTGAAAAACGTTCCGGTCAGTTTATTTG
TTATTGATGAGGCTCATTGCATATCAGAATGGGGACATGATTTCAGGCCTGATTACTCGAAGCTCGGGCCTTTCAGGCAG
GCACTCGGAAAGCCGCCTGTATTGGCGCTGACCGCAACAGCGACAAAAGAAACACTCAGAGACGTGACGGATGTGCTTGG
ACTTGAGCATGCGGTGCGTCATCTTTATTCAGTCAACCGGCCGAATATTCTTCTGGCGGCAGAACATTTGGCTGATAATA
CCGAAAAAATAAGCAGGCTCACGGAGCTTGCCGAAAAGCTTGAAGGCCCGGGTATCATATATTGTCCGACCAGAAAATGG
GCGGAAGAGCTTGCGGCTGAGCTGAACGAAAAAACGGGAAAGCGGACGGATTATTATCACGGCGGAATGGATACAGGCGA
CAGGATTTTAATCCAGCAGCAATTTATCCATAACCAGCTTGATTGCATTTGCTGCACCAATGCGTTCGGCATGGGTGTGG
ATAAGTCAGATATCCGCTTTGTCATTCACTTTTATCCTCCCCAAACGGCCGAGGCCTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGCAGCCCGAGTGTCAGTATTTTGCTGAGGGCGCCCGGCGATACCGAGCTTCAGCAGCAGATTATTCAGAC
AGAAAGCCTGTCTGATTATGACCTGGAAGGCATTCTGGCCGTCATACGGGATGCCGGTACGGGTGATGAGCGAAAGCTTC
GGGACGTTCTGATCAATAAGGGCGTCCAGGAAACACAGGCGCGAACGGCCGTCCATCTGTATCTGCAAGGAAAAACCACA
AAAGACCAGCTGCAGGAAGAACTGACATCGCGCGTGGAAAAGAAGCTGCGTAAAATGAATCGTTTTTCGGCGTTATTAGA
GCGGAAAGAATGTATAAGAGAAGCGCTGCTGTCTTATTTTGATGAACCGTATGAGCCTGATGGTCAAACCGGACAATGCT
GCAGCAGCTGCGGACTTGATCTGGCTCCGTACGAGCAAAAAGGAGAACGTAAAAATATGGAACGGTTTGAAGATTGGAAG
CTGGAATTAGGCCGGATTTTCGGATCAGAGTCTGCGGGTGAGTTCAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(20-178)

Helicase conserved C-terminal domain (Helicase_C)

(215-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

67.944

100

0.679

Multiple sequence alignment