Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ETL58_RS12410 Genome accession   NZ_CP035413
Coordinates   2403705..2404508 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2398705..2409508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS12385 (ETL58_12385) glpQB 2399843..2400574 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  ETL58_RS12390 (ETL58_12390) yqiI 2400653..2401273 (-) 621 WP_080276607.1 N-acetylmuramoyl-L-alanine amidase -
  ETL58_RS12395 (ETL58_12395) - 2401293..2401589 (-) 297 WP_014480225.1 hypothetical protein -
  ETL58_RS12400 (ETL58_12400) - 2401897..2402049 (+) 153 WP_014480226.1 hypothetical protein -
  ETL58_RS12405 (ETL58_12405) yqiG 2402122..2403240 (+) 1119 WP_032730375.1 NADH-dependent flavin oxidoreductase -
  ETL58_RS12410 (ETL58_12410) spo0A 2403705..2404508 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ETL58_RS12415 (ETL58_12415) spoIVB 2404784..2406064 (-) 1281 WP_014480228.1 SpoIVB peptidase -
  ETL58_RS12420 (ETL58_12420) recN 2406239..2407969 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  ETL58_RS12425 (ETL58_12425) argR 2408006..2408455 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ETL58_RS12430 (ETL58_12430) yqxC 2408553..2409398 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=340794 ETL58_RS12410 WP_003226427.1 2403705..2404508(-) (spo0A) [Bacillus subtilis strain SRCM103629]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=340794 ETL58_RS12410 WP_003226427.1 2403705..2404508(-) (spo0A) [Bacillus subtilis strain SRCM103629]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATAATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment