Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ETL58_RS11425 Genome accession   NZ_CP035413
Coordinates   2226447..2227067 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2221447..2232067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS11385 (ETL58_11385) ptsA 2222578..2223084 (-) 507 WP_029317998.1 PTS glucose transporter subunit IIA -
  ETL58_RS11390 (ETL58_11390) ypqA 2223222..2223641 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ETL58_RS11395 (ETL58_11395) sppG 2223662..2224039 (-) 378 WP_004398696.1 YppG family protein -
  ETL58_RS11400 (ETL58_11400) yppF 2224227..2224415 (+) 189 WP_003230690.1 YppF family protein -
  ETL58_RS11405 (ETL58_11405) yppE 2224454..2224825 (-) 372 WP_015714151.1 YppE family protein -
  ETL58_RS11410 (ETL58_11410) yppD 2224871..2225116 (-) 246 WP_015251831.1 YppD family protein -
  ETL58_RS11415 (ETL58_11415) sspM 2225315..2225419 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ETL58_RS11420 (ETL58_11420) yppC 2225444..2226406 (-) 963 WP_032729081.1 DUF2515 domain-containing protein -
  ETL58_RS11425 (ETL58_11425) recU 2226447..2227067 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ETL58_RS11430 (ETL58_11430) ponA 2227089..2229842 (+) 2754 WP_029317996.1 PBP1A family penicillin-binding protein -
  ETL58_RS11435 (ETL58_11435) ypoC 2229918..2230412 (-) 495 WP_009967579.1 YpoC family protein -
  ETL58_RS11440 (ETL58_11440) nth 2230409..2231068 (-) 660 WP_009967580.1 endonuclease III -
  ETL58_RS11445 (ETL58_11445) dnaD 2231087..2231785 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=340793 ETL58_RS11425 WP_004399067.1 2226447..2227067(+) (recU) [Bacillus subtilis strain SRCM103629]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=340793 ETL58_RS11425 WP_004399067.1 2226447..2227067(+) (recU) [Bacillus subtilis strain SRCM103629]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGATTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment