Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   ETL58_RS08070 Genome accession   NZ_CP035413
Coordinates   1507856..1508431 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1502856..1513431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS08040 (ETL58_08040) dapD 1503044..1503754 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  ETL58_RS08045 (ETL58_08045) dapI 1503824..1504948 (+) 1125 WP_038428899.1 N-acetyldiaminopimelate deacetylase -
  ETL58_RS08050 (ETL58_08050) ykuS 1505010..1505255 (+) 246 WP_003232382.1 YkuS family protein -
  ETL58_RS08055 (ETL58_08055) mscT 1505292..1506095 (-) 804 WP_029317733.1 small-conductance mechanosensitive channel protein MscT -
  ETL58_RS08060 (ETL58_08060) ahpA 1506332..1506874 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  ETL58_RS08065 (ETL58_08065) ykuV 1506944..1507390 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  ETL58_RS08070 (ETL58_08070) rok 1507856..1508431 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  ETL58_RS08075 (ETL58_08075) cse15 1508472..1509437 (-) 966 WP_029317734.1 spore protein Cse15 -
  ETL58_RS08080 (ETL58_08080) mobA 1509574..1510173 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  ETL58_RS08085 (ETL58_08085) moeB 1510224..1511243 (+) 1020 WP_029317735.1 molybdopterin-synthase adenylyltransferase MoeB -
  ETL58_RS08090 (ETL58_08090) glp 1511261..1512553 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  ETL58_RS08095 (ETL58_08095) mobB 1512514..1513035 (+) 522 WP_015252182.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=340787 ETL58_RS08070 WP_003232378.1 1507856..1508431(+) (rok) [Bacillus subtilis strain SRCM103629]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=340787 ETL58_RS08070 WP_003232378.1 1507856..1508431(+) (rok) [Bacillus subtilis strain SRCM103629]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment