Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   F5K02_RS08040 Genome accession   NZ_CP044132
Coordinates   1593022..1593471 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1588022..1598471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS08000 (F5K02_08065) ctaE 1588151..1588774 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  F5K02_RS08005 (F5K02_08070) ctaF 1588777..1589109 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  F5K02_RS08010 (F5K02_08075) ctaG 1589134..1590018 (+) 885 WP_020953993.1 cytochrome c oxidase assembly factor CtaG -
  F5K02_RS08015 (F5K02_08080) - 1590053..1590412 (-) 360 WP_015239802.1 YugN family protein -
  F5K02_RS08020 (F5K02_08085) - 1590553..1590996 (+) 444 WP_017417724.1 CBS domain-containing protein -
  F5K02_RS08025 (F5K02_08090) - 1591081..1592121 (+) 1041 WP_007409690.1 CAP domain-containing protein -
  F5K02_RS08030 (F5K02_08095) - 1592286..1592696 (+) 411 WP_007409691.1 YlbD family protein -
  F5K02_RS08035 (F5K02_08100) - 1592712..1592951 (+) 240 WP_003154475.1 YlbE-like family protein -
  F5K02_RS08040 (F5K02_08105) ylbF 1593022..1593471 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  F5K02_RS08045 (F5K02_08110) - 1593530..1593802 (+) 273 WP_003154470.1 YlbG family protein -
  F5K02_RS08050 (F5K02_08115) - 1593893..1594102 (+) 210 WP_007409692.1 hypothetical protein -
  F5K02_RS08055 (F5K02_08120) rsmD 1594102..1594656 (+) 555 WP_007409693.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  F5K02_RS08060 (F5K02_08125) coaD 1594661..1595143 (+) 483 WP_007409694.1 pantetheine-phosphate adenylyltransferase -
  F5K02_RS08065 (F5K02_08130) ylbJ 1595162..1596388 (-) 1227 WP_094031688.1 sporulation integral membrane protein YlbJ -
  F5K02_RS08070 (F5K02_08135) - 1596568..1597347 (+) 780 WP_014304961.1 patatin family protein -
  F5K02_RS08075 (F5K02_08140) sepM 1597353..1598375 (+) 1023 WP_007409697.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=340785 F5K02_RS08040 WP_003154472.1 1593022..1593471(+) (ylbF) [Bacillus amyloliquefaciens strain ZKY01]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=340785 F5K02_RS08040 WP_003154472.1 1593022..1593471(+) (ylbF) [Bacillus amyloliquefaciens strain ZKY01]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGTTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879