Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   VCD_RS12030 Genome accession   NC_012668
Coordinates   2572185..2573552 (-) Length   455 a.a.
NCBI ID   WP_079993504.1    Uniprot ID   -
Organism   Vibrio cholerae MJ-1236     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2567185..2578552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS11995 (VCD_003312) moaE 2567908..2568360 (-) 453 WP_000350081.1 molybdopterin synthase catalytic subunit MoaE -
  VCD_RS12000 (VCD_003313) moaD 2568362..2568607 (-) 246 WP_000598590.1 molybdopterin synthase sulfur carrier subunit -
  VCD_RS12005 (VCD_003314) moaC 2568604..2569083 (-) 480 WP_000080915.1 cyclic pyranopterin monophosphate synthase MoaC -
  VCD_RS12010 (VCD_003315) moaB 2569094..2569606 (-) 513 WP_000509705.1 molybdenum cofactor biosynthesis protein B -
  VCD_RS12015 (VCD_003316) moaA 2569666..2570655 (-) 990 WP_000068572.1 GTP 3',8-cyclase MoaA -
  VCD_RS12020 (VCD_003317) - 2570961..2571851 (+) 891 WP_000061070.1 YvcK family protein -
  VCD_RS12025 (VCD_003318) luxU 2571840..2572181 (-) 342 WP_001209531.1 quorum-sensing phosphorelay protein LuxU -
  VCD_RS12030 (VCD_003319) luxO 2572185..2573552 (-) 1368 WP_079993504.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  VCD_RS12040 (VCD_003320) uvrB 2573983..2576013 (-) 2031 WP_000029983.1 excinuclease ABC subunit UvrB -
  VCD_RS12050 (VCD_003321) rsxA 2576895..2577476 (+) 582 WP_000141550.1 electron transport complex subunit RsxA -
  VCD_RS12055 (VCD_003322) rsxB 2577476..2578063 (+) 588 WP_000104488.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50897.16 Da        Isoelectric Point: 5.4157

>NTDB_id=34078 VCD_RS12030 WP_079993504.1 2572185..2573552(-) (luxO) [Vibrio cholerae MJ-1236]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREPDLILLDLRLPDMTGMDVLYAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRARGDDVIEIAYSLLDF
MSKEEGKDFVRLSAEVVERFRQYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMSAPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQTWNEKVKEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=34078 VCD_RS12030 WP_079993504.1 2572185..2573552(-) (luxO) [Vibrio cholerae MJ-1236]
ATGGTAGAAGACACGGCGTCGGTGGCGGCGCTGTATCGTTCTTACCTCACACCGCTGGATATTGATATCAATATCGTGGG
TACCGGACGCGATGCCATCGAGAGTATTGGCCGTCGCGAGCCTGACTTAATCCTGCTGGATTTACGTTTGCCAGATATGA
CGGGGATGGACGTACTCTATGCAGTGAAAGAGAAATCACCGGATGTGCCTATCGTGTTTATGACCGCTCATGGTTCGATT
GATACGGCGGTTGAAGCCATGCGTCATGGTGCGCAAGACTTTTTGATCAAGCCGTGTGAAGCGGACCGACTGCGGGTCAC
AGTGAATAATGCGATTCGCAAAGCCTCGAAACTCAAAAACGATGTTGATAATAAAAATCAAAACTATCAAGGCTTTATTG
GTAGCAGTCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGC
GAAAGTGGTACAGGTAAAGAAGTGTGCGCGGAAGCGATTCATGCCGCGAGCAAGCGTGGAGATAAGCCATTTATCGCCAT
CAACTGTGCGGCCATTCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTCAAAGGGGCTTTTACTGGGGCGGCGA
CTGAGCGTCAAGGCGCGGCAGAAGCGGCTGATGGGGGAACCCTCTTTTTGGATGAATTGTGCGAAATGGATCTGGATCTG
CAGACCAAACTTCTGCGCTTTATTCAGACAGGGACATTCCAAAAAGTCGGCTCTTCCAAAATGAAAAGCGTGGATGTGCG
TTTTGTGTGTGCAACGAACCGCGATCCGTGGAAGGAAGTGCAAGAAGGACGCTTTCGTGAAGACCTGTACTACCGCTTGT
ATGTGATCCCGCTGCATTTACCGCCATTGCGCGCGCGTGGTGATGATGTGATCGAGATTGCTTATTCACTGCTTGACTTT
ATGTCCAAGGAAGAGGGCAAAGATTTTGTCCGTTTGTCGGCTGAAGTGGTGGAGCGTTTTCGCCAATACGAGTGGCCGGG
CAACGTGCGTCAATTGCAAAACGTTTTGCGCAACGTGGTTGTGCTCAATGAAGGTCGTGAAATCACCCTAGATATGCTGC
CTCCTCCTCTTAATCAAATGTCCGCGCCGATCAATCGGGCTTTACCGCTTGCGCATGAGAATAAAGTATCCGTGCATGAG
ATTTTTCCGCTGTGGATGACCGAAAAACAAGCCATTGAACAAGCCATCGAAGCGTGTGATGGCAACATTCCCCGTGCCGC
AACCTATCTGGATGTCAGCCCGTCAACCATCTATCGCAAGCTGCAAACTTGGAATGAAAAAGTGAAAGAAAAAGAGAAGG
AACGGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

99.78

100

0.998
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38

Multiple sequence alignment