Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ETL58_RS06020 Genome accession   NZ_CP035413
Coordinates   1133374..1133952 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103629     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128374..1138952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETL58_RS06000 (ETL58_06000) hemAT 1128885..1130183 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  ETL58_RS06005 (ETL58_06005) comW 1130322..1131851 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  ETL58_RS06010 (ETL58_06010) yhxC 1131963..1132820 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ETL58_RS06015 (ETL58_06015) yhzC 1132848..1133081 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ETL58_RS06020 (ETL58_06020) comK 1133374..1133952 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  ETL58_RS06025 (ETL58_06025) yhxD 1133999..1134898 (-) 900 WP_101172512.1 SDR family oxidoreductase -
  ETL58_RS06030 (ETL58_06030) yhjA 1135115..1135384 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  ETL58_RS06035 (ETL58_06035) yhjB 1135428..1136897 (-) 1470 WP_003233134.1 sodium:solute symporter -
  ETL58_RS06040 (ETL58_06040) yhjC 1136894..1137094 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ETL58_RS06045 (ETL58_06045) - 1137293..1137664 (-) 372 WP_014476361.1 hypothetical protein -
  ETL58_RS06050 (ETL58_06050) yhjE 1137816..1138439 (+) 624 WP_010886465.1 VTT domain-containing protein -
  ETL58_RS06055 (ETL58_06055) lepB 1138441..1138947 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=340774 ETL58_RS06020 WP_029317573.1 1133374..1133952(+) (comK) [Bacillus subtilis strain SRCM103629]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=340774 ETL58_RS06020 WP_029317573.1 1133374..1133952(+) (comK) [Bacillus subtilis strain SRCM103629]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment