Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   F5K02_RS04375 Genome accession   NZ_CP044132
Coordinates   868100..868816 (+) Length   238 a.a.
NCBI ID   WP_053573584.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 863100..873816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS04345 (F5K02_04360) - 863280..863657 (+) 378 WP_003155597.1 DUF1992 domain-containing protein -
  F5K02_RS04350 (F5K02_04365) - 863667..864098 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  F5K02_RS04355 (F5K02_04370) - 864114..864356 (-) 243 WP_003155595.1 spore germination protein -
  F5K02_RS04360 (F5K02_04375) - 864371..864631 (-) 261 WP_014417185.1 spore germination protein -
  F5K02_RS04365 (F5K02_04380) treP 864902..866317 (+) 1416 WP_015417025.1 PTS system trehalose-specific EIIBC component -
  F5K02_RS04370 (F5K02_04385) treC 866393..868078 (+) 1686 WP_241458056.1 alpha,alpha-phosphotrehalase -
  F5K02_RS04375 (F5K02_04390) treR 868100..868816 (+) 717 WP_053573584.1 trehalose operon repressor Regulator
  F5K02_RS04380 (F5K02_04395) - 868949..869614 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  F5K02_RS04385 (F5K02_04400) - 869650..870411 (-) 762 WP_085341820.1 YibE/F family protein -
  F5K02_RS04390 (F5K02_04405) - 870408..871547 (-) 1140 WP_061581199.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27461.46 Da        Isoelectric Point: 7.3204

>NTDB_id=340752 F5K02_RS04375 WP_053573584.1 868100..868816(+) (treR) [Bacillus amyloliquefaciens strain ZKY01]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTTVHRLGLILPPSEAAKELGTEADEKVWEVVRSRRIDGEQIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLDDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=340752 F5K02_RS04375 WP_053573584.1 868100..868816(+) (treR) [Bacillus amyloliquefaciens strain ZKY01]
ATGAAAGTGAATAAATACATCACAATCTATAAAGATATGGTGCGGCAGATCGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTGTGCGATCAATACGGCACATCACGAGAAACCGTCCGCAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGTTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGAGAACGACGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGAAGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACAAATTATTTTGGACAAGGATTACTTTGTAAAAAAACATGTGCCTCTATTGACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
AGAGGACCGGAAGTATTTGGATCTCGGCGGATTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGACGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(6-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.797

99.16

0.424

Multiple sequence alignment