Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   VCD_RS10990 Genome accession   NC_012668
Coordinates   2355187..2356611 (+) Length   474 a.a.
NCBI ID   WP_001183680.1    Uniprot ID   A0A0H3AJR3
Organism   Vibrio cholerae MJ-1236     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2350187..2361611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS10970 (VCD_003110) - 2350455..2351240 (-) 786 WP_000718969.1 adenosylcobinamide-GDP ribazoletransferase -
  VCD_RS10975 (VCD_003111) cobT 2351240..2352265 (-) 1026 WP_000887084.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  VCD_RS10980 (VCD_003113) msrB 2352876..2353322 (-) 447 WP_000935885.1 peptide-methionine (R)-S-oxide reductase MsrB -
  VCD_RS10985 (VCD_003114) - 2353668..2355041 (+) 1374 WP_000117953.1 L-cystine transporter -
  VCD_RS10990 (VCD_003115) sbcB 2355187..2356611 (+) 1425 WP_001183680.1 exodeoxyribonuclease I Machinery gene
  VCD_RS10995 (VCD_003116) - 2356643..2357017 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  VCD_RS11000 (VCD_003117) - 2357008..2357682 (+) 675 WP_000266245.1 LrgB family protein -
  VCD_RS11005 (VCD_003118) cdd 2357852..2358739 (+) 888 WP_001245905.1 cytidine deaminase -
  VCD_RS11010 (VCD_003119) - 2358898..2359773 (+) 876 WP_000462872.1 AEC family transporter -
  VCD_RS11015 (VCD_003120) purT 2359927..2361102 (+) 1176 WP_000468082.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54598.02 Da        Isoelectric Point: 6.0792

>NTDB_id=34075 VCD_RS10990 WP_001183680.1 2355187..2356611(+) (sbcB) [Vibrio cholerae MJ-1236]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDTEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=34075 VCD_RS10990 WP_001183680.1 2355187..2356611(+) (sbcB) [Vibrio cholerae MJ-1236]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCAAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAACCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGTCACTAC
ACTAGCTGGATTGTGCCTATTGCTTGGCATCCAACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCCGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCACACCTTAACCGATACCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3AJR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1

Multiple sequence alignment