Detailed information NTG0340735

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: F5K02_RS01545
• Genome accession: NZ_CP044132
• Coordinates: 310299..311420 (+)
• Length: 373 a.a.
• NCBI ID: WP_241457861.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain ZKY01
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 305299..316420

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F5K02_RS01525 (F5K02_01540)	-	305611..306603 (-)	993	Protein_259	DUF5105 domain-containing protein	-
F5K02_RS01530 (F5K02_01545)	-	306730..308130 (+)	1401	WP_241458316.1	YcdB/YcdC domain-containing protein	-
F5K02_RS01535 (F5K02_01550)	-	308331..309689 (+)	1359	WP_094032898.1	YcdB/YcdC domain-containing protein	-
F5K02_RS01540 (F5K02_01555)	-	309686..310189 (-)	504	WP_241457859.1	M15 family metallopeptidase	-
F5K02_RS01545 (F5K02_01560)	rapF	310299..311420 (+)	1122	WP_241457861.1	Rap family tetratricopeptide repeat protein	Regulator
F5K02_RS01550 (F5K02_01565)	-	311536..312315 (+)	780	WP_094032899.1	glucose 1-dehydrogenase	-
F5K02_RS01555 (F5K02_01570)	-	312399..314078 (+)	1680	WP_144664463.1	alpha-glucosidase	-
F5K02_RS01560 (F5K02_01575)	-	314264..315223 (+)	960	WP_144664465.1	metal ABC transporter substrate-binding protein	-
F5K02_RS01565 (F5K02_01580)	-	315278..315973 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44362.62 Da
• Isoelectric Point: 5.2649

>NTDB_id=340735 F5K02_RS01545 WP_241457861.1 310299..311420(+) (rapF) [Bacillus amyloliquefaciens strain ZKY01]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAETLKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLKCALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHQRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=340735 F5K02_RS01545 WP_241457861.1 310299..311420(+) (rapF) [Bacillus amyloliquefaciens strain ZKY01]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAACGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAGAACCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTCGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGGGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TACGCGGGGCAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCAAATGCGCCTTGGAACACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGATTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGCGCGGCGGAGTGGGAAG
ATGAGATCTATATGACGAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATTCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATCAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (187-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.591	99.732	0.405