Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ETK71_RS12420 Genome accession   NZ_CP035411
Coordinates   2418530..2418865 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM103622     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413530..2423865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK71_RS12400 (ETK71_12400) gcvT 2414123..2415211 (-) 1089 WP_041850013.1 glycine cleavage system aminomethyltransferase GcvT -
  ETK71_RS12405 (ETK71_12405) hepAA 2415652..2417325 (+) 1674 WP_041850014.1 SNF2-related protein -
  ETK71_RS12410 (ETK71_12410) yqhG 2417346..2418140 (+) 795 WP_003230200.1 YqhG family protein -
  ETK71_RS12415 (ETK71_12415) sinI 2418323..2418496 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ETK71_RS12420 (ETK71_12420) sinR 2418530..2418865 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ETK71_RS12425 (ETK71_12425) tasA 2418958..2419743 (-) 786 WP_015251717.1 biofilm matrix protein TasA -
  ETK71_RS12430 (ETK71_12430) sipW 2419807..2420379 (-) 573 WP_003246088.1 signal peptidase I SipW -
  ETK71_RS12435 (ETK71_12435) tapA 2420363..2421124 (-) 762 WP_015251716.1 amyloid fiber anchoring/assembly protein TapA -
  ETK71_RS12440 (ETK71_12440) yqzG 2421396..2421722 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  ETK71_RS12445 (ETK71_12445) spoIITA 2421764..2421943 (-) 180 WP_003230176.1 YqzE family protein -
  ETK71_RS12450 (ETK71_12450) comGG 2422014..2422388 (-) 375 WP_015251714.1 ComG operon protein ComGG Machinery gene
  ETK71_RS12455 (ETK71_12455) comGF 2422389..2422772 (-) 384 WP_041850015.1 ComG operon protein ComGF Machinery gene
  ETK71_RS12460 (ETK71_12460) comGE 2422798..2423145 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  ETK71_RS12465 (ETK71_12465) comGD 2423129..2423560 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  ETK71_RS12470 (ETK71_12470) comGC 2423550..2423846 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=340718 ETK71_RS12420 WP_003226345.1 2418530..2418865(+) (sinR) [Bacillus subtilis strain SRCM103622]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=340718 ETK71_RS12420 WP_003226345.1 2418530..2418865(+) (sinR) [Bacillus subtilis strain SRCM103622]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment