Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ETK71_RS11255 Genome accession   NZ_CP035411
Coordinates   2208007..2208627 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103622     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2203007..2213627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK71_RS11215 (ETK71_11215) ptsA 2204138..2204644 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  ETK71_RS11220 (ETK71_11220) ypqA 2204782..2205201 (+) 420 WP_041849958.1 Hsp20/alpha crystallin family protein -
  ETK71_RS11225 (ETK71_11225) sppG 2205222..2205599 (-) 378 WP_004398696.1 YppG family protein -
  ETK71_RS11230 (ETK71_11230) yppF 2205787..2205975 (+) 189 WP_003230690.1 YppF family protein -
  ETK71_RS11235 (ETK71_11235) yppE 2206014..2206385 (-) 372 WP_021481525.1 YppE family protein -
  ETK71_RS11240 (ETK71_11240) yppD 2206431..2206676 (-) 246 WP_041849959.1 DUF5446 family protein -
  ETK71_RS11245 (ETK71_11245) sspM 2206875..2206979 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ETK71_RS11250 (ETK71_11250) yppC 2207004..2207966 (-) 963 WP_041849960.1 DUF2515 domain-containing protein -
  ETK71_RS11255 (ETK71_11255) recU 2208007..2208627 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ETK71_RS11260 (ETK71_11260) ponA 2208649..2211399 (+) 2751 WP_041849961.1 PBP1A family penicillin-binding protein -
  ETK71_RS11265 (ETK71_11265) ypoC 2211474..2211968 (-) 495 WP_041849962.1 YpoC family protein -
  ETK71_RS11270 (ETK71_11270) nth 2211965..2212624 (-) 660 WP_009967580.1 endonuclease III -
  ETK71_RS11275 (ETK71_11275) dnaD 2212643..2213341 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=340714 ETK71_RS11255 WP_004399067.1 2208007..2208627(+) (recU) [Bacillus subtilis strain SRCM103622]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=340714 ETK71_RS11255 WP_004399067.1 2208007..2208627(+) (recU) [Bacillus subtilis strain SRCM103622]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment