Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   FOB68_RS11285 Genome accession   NZ_CP044106
Coordinates   2213577..2213990 (-) Length   137 a.a.
NCBI ID   WP_000998780.1    Uniprot ID   C1PH97
Organism   Staphylococcus aureus strain FDAARGOS_660     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2208577..2218990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB68_RS11245 (FOB68_11250) - 2208641..2209153 (-) 513 Protein_2102 LysR family transcriptional regulator -
  FOB68_RS11250 (FOB68_11255) - 2209266..2209817 (+) 552 WP_000627025.1 flavodoxin family protein -
  FOB68_RS11255 (FOB68_11260) - 2209810..2211030 (+) 1221 WP_000130756.1 MFS transporter -
  FOB68_RS11260 (FOB68_11265) - 2211092..2211388 (-) 297 WP_000179901.1 TfoX/Sxy family protein -
  FOB68_RS11265 (FOB68_11270) - 2211437..2211640 (-) 204 WP_000389759.1 DUF6007 family protein -
  FOB68_RS11270 (FOB68_11275) - 2211948..2212934 (+) 987 WP_000662031.1 tRNA dihydrouridine synthase -
  FOB68_RS11275 (FOB68_11280) - 2213042..2213515 (-) 474 WP_000455975.1 GNAT family N-acetyltransferase -
  FOB68_RS11285 (FOB68_11290) lrpC 2213577..2213990 (-) 414 WP_000998780.1 Lrp/AsnC family transcriptional regulator Machinery gene
  FOB68_RS11290 (FOB68_11295) - 2214091..2214498 (+) 408 WP_000173401.1 hypothetical protein -
  FOB68_RS11295 (FOB68_11300) - 2214837..2215448 (-) 612 WP_000856594.1 hypothetical protein -
  FOB68_RS14535 - 2215711..2215848 (-) 138 WP_021758025.1 hypothetical protein -
  FOB68_RS14625 - 2216009..2216431 (-) 423 WP_223846063.1 ATP-binding protein -
  FOB68_RS14630 - 2216428..2216769 (-) 342 WP_223846064.1 hypothetical protein -
  FOB68_RS14635 - 2216766..2217695 (-) 930 WP_014363367.1 helicase HerA domain-containing protein -
  FOB68_RS11305 (FOB68_11310) - 2217701..2218987 (-) 1287 WP_000513494.1 SIR2 family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15971.29 Da        Isoelectric Point: 4.6692

>NTDB_id=340714 FOB68_RS11285 WP_000998780.1 2213577..2213990(-) (lrpC) [Staphylococcus aureus strain FDAARGOS_660]
MNDLINEKIINVLLNNSRITINELSKQVNLSAPAVRERVNKLEDQGIIKGYTINIDYKELGYDVEILIELTIKNNRYKDF
KEFISKQDNVEFCYRVSGEACFVFKVRLENMDEVETFVDTIQPYGQTKCQFIFSSVV

Nucleotide


Download         Length: 414 bp        

>NTDB_id=340714 FOB68_RS11285 WP_000998780.1 2213577..2213990(-) (lrpC) [Staphylococcus aureus strain FDAARGOS_660]
ATGAATGACTTAATAAATGAAAAAATAATCAATGTTTTGTTAAATAATAGTAGAATTACTATTAATGAATTAAGTAAACA
AGTGAACTTATCTGCTCCAGCTGTAAGAGAAAGGGTAAATAAACTTGAAGATCAAGGTATTATAAAAGGTTATACAATTA
ACATAGATTATAAGGAATTAGGTTACGATGTAGAAATATTAATTGAGTTAACTATAAAGAATAATAGATACAAAGATTTT
AAAGAATTTATTTCAAAACAAGATAATGTTGAGTTTTGTTATCGTGTATCAGGAGAGGCATGTTTTGTATTTAAGGTTCG
GTTGGAAAATATGGATGAAGTGGAAACATTTGTTGATACCATACAACCATATGGGCAGACAAAATGTCAGTTTATCTTTT
CATCAGTTGTCTAA

Domains

Predicted by InterProScan.

Winged helix-turn-helix DNA-binding (HTH_24)

(3-49)

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(68-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1PH97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

43.284

97.81

0.423

Multiple sequence alignment