Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ETK71_RS07885 Genome accession   NZ_CP035411
Coordinates   1495009..1495287 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM103622     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490009..1500287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK71_RS07865 (ETK71_07865) panEB 1491196..1492107 (+) 912 WP_041850871.1 ketopantoate reductase family protein -
  ETK71_RS07870 (ETK71_07870) ampS 1492141..1493373 (-) 1233 WP_003232341.1 aminopeptidase -
  ETK71_RS07875 (ETK71_07875) ykpC 1493483..1493617 (-) 135 WP_003238865.1 protein YkpC -
  ETK71_RS07880 (ETK71_07880) mreBH 1493718..1494725 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  ETK71_RS07885 (ETK71_07885) abrB 1495009..1495287 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  ETK71_RS07890 (ETK71_07890) kinC 1495477..1496763 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  ETK71_RS07895 (ETK71_07895) ykqA 1496779..1497606 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  ETK71_RS07900 (ETK71_07900) ktrC 1497669..1498334 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  ETK71_RS07905 (ETK71_07905) ade 1498490..1500223 (+) 1734 WP_129138147.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=340708 ETK71_RS07885 WP_003244728.1 1495009..1495287(+) (abrB) [Bacillus subtilis strain SRCM103622]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=340708 ETK71_RS07885 WP_003244728.1 1495009..1495287(+) (abrB) [Bacillus subtilis strain SRCM103622]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment