Detailed information NTG0340672

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ETK69_RS19715
• Genome accession: NZ_CP035410
• Coordinates: 3866818..3867963 (+)
• Length: 381 a.a.
• NCBI ID: WP_079891436.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain SRCM103616
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3861818..3872963

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETK69_RS19695 (ETK69_19695)	fnr	3862292..3863008 (-)	717	WP_017418713.1	fumarate/nitrate reduction transcriptional regulator Fnr	-
ETK69_RS19700 (ETK69_19700)	-	3863106..3864296 (-)	1191	WP_129093797.1	nitrate/nitrite transporter	-
ETK69_RS19705 (ETK69_19705)	argS	3864431..3866101 (-)	1671	WP_025649385.1	arginine--tRNA ligase	-
ETK69_RS19710 (ETK69_19710)	-	3866098..3866526 (-)	429	WP_003151069.1	DUF1934 family protein	-
ETK69_RS19715 (ETK69_19715)	rapF	3866818..3867963 (+)	1146	WP_079891436.1	Rap family tetratricopeptide repeat protein	Regulator
ETK69_RS19720 (ETK69_19720)	-	3867947..3868066 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
ETK69_RS19725 (ETK69_19725)	speB	3868189..3869061 (-)	873	WP_003151054.1	agmatinase	-
ETK69_RS19730 (ETK69_19730)	speE	3869121..3869951 (-)	831	WP_017418706.1	spermidine synthase	-
ETK69_RS19735 (ETK69_19735)	-	3870151..3872223 (+)	2073	WP_017418705.1	transglycosylase domain-containing protein	-
ETK69_RS19740 (ETK69_19740)	-	3872248..3872679 (-)	432	WP_017418704.1	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45816.31 Da
• Isoelectric Point: 5.0722

>NTDB_id=340672 ETK69_RS19715 WP_079891436.1 3866818..3867963(+) (rapF) [Bacillus velezensis strain SRCM103616]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEEDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYFIYKDEKKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLENIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLESKLMYADIEELALDVAKYYYTKEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=340672 ETK69_RS19715 WP_079891436.1 3866818..3867963(+) (rapF) [Bacillus velezensis strain SRCM103616]
GTGGCGAGTGTTTTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAGCTTGCAGGCCTGGAAGAAGATCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGGCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTCATTTATAAAGATGAAAAAAAATACAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGAACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGCCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAGAAAATATAGATAATGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTGGAATATTTATATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAGTAAACTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACAAAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAAGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.341	100	0.703
rapC	Bacillus subtilis subsp. subtilis str. 168	53.421	99.738	0.533