Detailed information NTG0034057

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: VCD_RS03705
• Genome accession: NC_012668
• Coordinates: 749616..750623 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae MJ-1236
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 744616..755623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VCD_RS03685 (VCD_001686)	metJ	744620..744937 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
VCD_RS03690 (VCD_001687)	-	745048..746325 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
VCD_RS03695 (VCD_001688)	rpmE	746633..746851 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
VCD_RS03700 (VCD_001689)	priA	747106..749310 (+)	2205	WP_001247858.1	primosomal protein N'	-
VCD_RS03705 (VCD_001690)	cytR	749616..750623 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
VCD_RS03710 (VCD_001691)	-	750795..751346 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
VCD_RS03715 (VCD_001692)	hslV	751483..752040 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
VCD_RS03720 (VCD_001693)	hslU	752106..753437 (+)	1332	WP_001293370.1	HslU--HslV peptidase ATPase subunit	-
VCD_RS03725 (VCD_001694)	-	753541..754458 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
VCD_RS03730 (VCD_001695)	rraA	754533..755048 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=34057 VCD_RS03705 WP_000224452.1 749616..750623(+) (cytR) [Vibrio cholerae MJ-1236]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=34057 VCD_RS03705 WP_000224452.1 749616..750623(+) (cytR) [Vibrio cholerae MJ-1236]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGTTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904