Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ETK61_RS13390 Genome accession   NZ_CP035406
Coordinates   2464716..2465519 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103612     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2459716..2470519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS13365 (ETK61_13370) glpQB 2460852..2461583 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  ETK61_RS13370 (ETK61_13375) yqiI 2461662..2462282 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase -
  ETK61_RS13375 (ETK61_13380) - 2462302..2462598 (-) 297 WP_014480225.1 hypothetical protein -
  ETK61_RS13380 (ETK61_13385) - 2462906..2463058 (+) 153 WP_129137781.1 hypothetical protein -
  ETK61_RS13385 (ETK61_13390) yqiG 2463130..2464251 (+) 1122 WP_087614181.1 NADH-dependent flavin oxidoreductase -
  ETK61_RS13390 (ETK61_13395) spo0A 2464716..2465519 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ETK61_RS13400 (ETK61_13405) spoIVB 2465795..2467075 (-) 1281 WP_041334924.1 SpoIVB peptidase -
  ETK61_RS13405 (ETK61_13410) recN 2467250..2468980 (-) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  ETK61_RS13410 (ETK61_13415) argR 2469017..2469466 (-) 450 WP_017696434.1 arginine repressor ArgR -
  ETK61_RS13415 (ETK61_13420) yqxC 2469564..2470409 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=340559 ETK61_RS13390 WP_003226427.1 2464716..2465519(-) (spo0A) [Bacillus subtilis strain SRCM103612]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=340559 ETK61_RS13390 WP_003226427.1 2464716..2465519(-) (spo0A) [Bacillus subtilis strain SRCM103612]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment