Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ETK61_RS12410 Genome accession   NZ_CP035406
Coordinates   2287323..2287943 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103612     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2282323..2292943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS12370 (ETK61_12375) ptsA 2283454..2283960 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  ETK61_RS12375 (ETK61_12380) ypqA 2284098..2284517 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ETK61_RS12380 (ETK61_12385) sppG 2284538..2284915 (-) 378 WP_004398696.1 YppG family protein -
  ETK61_RS12385 (ETK61_12390) yppF 2285103..2285291 (+) 189 WP_129137758.1 YppF family protein -
  ETK61_RS12390 (ETK61_12395) yppE 2285330..2285701 (-) 372 WP_015714151.1 YppE family protein -
  ETK61_RS12395 (ETK61_12400) yppD 2285747..2285992 (-) 246 WP_015251831.1 YppD family protein -
  ETK61_RS12400 (ETK61_12405) sspM 2286191..2286295 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ETK61_RS12405 (ETK61_12410) yppC 2286320..2287282 (-) 963 WP_063335220.1 DUF2515 domain-containing protein -
  ETK61_RS12410 (ETK61_12415) recU 2287323..2287943 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ETK61_RS12415 (ETK61_12420) ponA 2287965..2290709 (+) 2745 WP_129137759.1 PBP1A family penicillin-binding protein -
  ETK61_RS12420 (ETK61_12425) ypoC 2290785..2291279 (-) 495 WP_009967579.1 YpoC family protein -
  ETK61_RS12425 (ETK61_12430) nth 2291276..2291935 (-) 660 WP_009967580.1 endonuclease III -
  ETK61_RS12430 (ETK61_12435) dnaD 2291954..2292652 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=340558 ETK61_RS12410 WP_004399067.1 2287323..2287943(+) (recU) [Bacillus subtilis strain SRCM103612]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=340558 ETK61_RS12410 WP_004399067.1 2287323..2287943(+) (recU) [Bacillus subtilis strain SRCM103612]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCGCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment