Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ETK61_RS05935 Genome accession   NZ_CP035406
Coordinates   1128451..1129029 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM103612     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1123451..1134029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS05915 (ETK61_05915) hemAT 1123970..1125268 (-) 1299 WP_015252424.1 heme-based aerotactic transducer HemAT -
  ETK61_RS05920 (ETK61_05920) comW 1125407..1126936 (-) 1530 WP_129137558.1 FAD-dependent oxidoreductase -
  ETK61_RS05925 (ETK61_05925) yhxC 1127040..1127897 (+) 858 WP_014479371.1 SDR family oxidoreductase -
  ETK61_RS05930 (ETK61_05930) yhzC 1127925..1128158 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  ETK61_RS05935 (ETK61_05935) comK 1128451..1129029 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ETK61_RS05940 (ETK61_05940) - 1129074..1129805 (-) 732 Protein_1096 SDR family oxidoreductase -
  ETK61_RS23760 - 1129909..1130202 (+) 294 Protein_1097 NAD(P)-dependent dehydrogenase -
  ETK61_RS05950 (ETK61_05950) yhjA 1130198..1130455 (+) 258 WP_129137559.1 excalibur calcium-binding domain-containing protein -
  ETK61_RS05955 (ETK61_05955) yhjB 1130499..1131968 (-) 1470 WP_129137560.1 sodium:solute symporter -
  ETK61_RS05960 (ETK61_05960) yhjC 1131965..1132165 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ETK61_RS05965 (ETK61_05965) - 1132364..1132735 (-) 372 WP_129137561.1 hypothetical protein -
  ETK61_RS05970 (ETK61_05970) yhjE 1132887..1133510 (+) 624 WP_010886465.1 VTT domain-containing protein -
  ETK61_RS05975 (ETK61_05975) lepB 1133512..1134018 (+) 507 WP_129137562.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=340538 ETK61_RS05935 WP_003245329.1 1128451..1129029(+) (comK) [Bacillus subtilis strain SRCM103612]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=340538 ETK61_RS05935 WP_003245329.1 1128451..1129029(+) (comK) [Bacillus subtilis strain SRCM103612]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment