Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ETK49_RS13440 Genome accession   NZ_CP035405
Coordinates   2569223..2569558 (+) Length   111 a.a.
NCBI ID   WP_025804940.1    Uniprot ID   A0AB37GFT9
Organism   Bacillus licheniformis strain SRCM103608     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2564223..2574558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK49_RS13420 (ETK49_13420) gcvT 2564655..2565749 (-) 1095 WP_003183436.1 glycine cleavage system aminomethyltransferase GcvT -
  ETK49_RS13425 (ETK49_13425) - 2566342..2568021 (+) 1680 WP_003183439.1 SNF2-related protein -
  ETK49_RS13430 (ETK49_13430) - 2568028..2568822 (+) 795 WP_003183441.1 YqhG family protein -
  ETK49_RS13435 (ETK49_13435) sinI 2569013..2569189 (+) 177 WP_003183444.1 anti-repressor SinI family protein Regulator
  ETK49_RS13440 (ETK49_13440) sinR 2569223..2569558 (+) 336 WP_025804940.1 helix-turn-helix domain-containing protein Regulator
  ETK49_RS13445 (ETK49_13445) - 2569663..2570457 (-) 795 WP_003183447.1 TasA family protein -
  ETK49_RS13450 (ETK49_13450) - 2570531..2571115 (-) 585 WP_003183449.1 signal peptidase I -
  ETK49_RS13455 (ETK49_13455) tapA 2571112..2571840 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  ETK49_RS13460 (ETK49_13460) - 2572150..2572437 (+) 288 WP_223307118.1 YqzG/YhdC family protein -
  ETK49_RS13465 (ETK49_13465) - 2572461..2572643 (-) 183 WP_003183456.1 YqzE family protein -
  ETK49_RS13470 (ETK49_13470) comGG 2572732..2573097 (-) 366 WP_003183459.1 competence type IV pilus minor pilin ComGG -
  ETK49_RS13475 (ETK49_13475) comGF 2573110..2573598 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  ETK49_RS13480 (ETK49_13480) comGE 2573507..2573854 (-) 348 WP_009327907.1 competence type IV pilus minor pilin ComGE -
  ETK49_RS13485 (ETK49_13485) comGD 2573838..2574275 (-) 438 WP_009327905.1 competence type IV pilus minor pilin ComGD -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12991.60 Da        Isoelectric Point: 5.9495

>NTDB_id=340488 ETK49_RS13440 WP_025804940.1 2569223..2569558(+) (sinR) [Bacillus licheniformis strain SRCM103608]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKRRQEKE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=340488 ETK49_RS13440 WP_025804940.1 2569223..2569558(+) (sinR) [Bacillus licheniformis strain SRCM103608]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCGATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAGAAG
ACAGGAAAAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928

Multiple sequence alignment