Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ETK49_RS00265 Genome accession   NZ_CP035405
Coordinates   48806..49096 (-) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SRCM103608     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 43806..54096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK49_RS00225 (ETK49_00225) - 43830..44159 (+) 330 WP_003178156.1 cyclic-di-AMP receptor -
  ETK49_RS00230 (ETK49_00230) - 44171..44611 (+) 441 WP_003178158.1 YaaR family protein -
  ETK49_RS00235 (ETK49_00235) holB 44623..45612 (+) 990 WP_003178160.1 DNA polymerase III subunit delta' -
  ETK49_RS00240 (ETK49_00240) - 45615..46442 (+) 828 WP_003178162.1 stage 0 sporulation family protein -
  ETK49_RS00245 (ETK49_00245) yabA 46457..46819 (+) 363 WP_003178164.1 DNA replication initiation control protein YabA -
  ETK49_RS00250 (ETK49_00250) - 46884..47627 (+) 744 WP_003178166.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ETK49_RS00255 (ETK49_00255) - 47614..47907 (+) 294 WP_003178169.1 GIY-YIG nuclease family protein -
  ETK49_RS00260 (ETK49_00260) rsmI 47882..48757 (+) 876 WP_025805862.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ETK49_RS00265 (ETK49_00265) abrB 48806..49096 (-) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  ETK49_RS00270 (ETK49_00270) metG 49604..51592 (+) 1989 WP_025805864.1 methionine--tRNA ligase -
  ETK49_RS00275 (ETK49_00275) - 51677..52444 (+) 768 WP_017474310.1 TatD family hydrolase -
  ETK49_RS00280 (ETK49_00280) - 52561..53886 (+) 1326 WP_003178178.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=340449 ETK49_RS00265 WP_085959887.1 48806..49096(-) (abrB) [Bacillus licheniformis strain SRCM103608]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=340449 ETK49_RS00265 WP_085959887.1 48806..49096(-) (abrB) [Bacillus licheniformis strain SRCM103608]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAACTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GCTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAGGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment