Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   SGPB_RS00215 Genome accession   NC_015600
Coordinates   29597..30352 (+) Length   251 a.a.
NCBI ID   WP_013851388.1    Uniprot ID   F5X424
Organism   Streptococcus pasteurianus ATCC 43144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24597..35352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS00195 (SGPB_0020) mreD 25145..25651 (+) 507 WP_013851386.1 rod shape-determining protein MreD -
  SGPB_RS00200 (SGPB_0021) - 25753..27120 (+) 1368 WP_003062782.1 PcsB-like coiled-coil domain-containing protein -
  SGPB_RS00205 (SGPB_0022) - 27261..28229 (+) 969 WP_003062784.1 ribose-phosphate diphosphokinase -
  SGPB_RS00210 (SGPB_0023) - 28432..29607 (+) 1176 WP_013851387.1 pyridoxal phosphate-dependent aminotransferase -
  SGPB_RS00215 (SGPB_0024) recO 29597..30352 (+) 756 WP_013851388.1 DNA repair protein RecO Machinery gene
  SGPB_RS00220 (SGPB_0025) plsX 30524..31519 (+) 996 WP_287550887.1 phosphate acyltransferase PlsX -
  SGPB_RS00225 (SGPB_0026) - 31536..31778 (+) 243 WP_003062793.1 acyl carrier protein -
  SGPB_RS00230 (SGPB_0027) purC 31902..32612 (+) 711 WP_013851390.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29204.51 Da        Isoelectric Point: 6.4980

>NTDB_id=34044 SGPB_RS00215 WP_013851388.1 29597..30352(+) (recO) [Streptococcus pasteurianus ATCC 43144]
MQTKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHAGKSRFNSVIQPLTAAKFILKINDTGLSFIEDYKEVESFKE
INADLFRLSYASYVTALADAAVPDGVADPQLFTFVNKTLSLMEEGLDYEILTNIFEIQLLERFGVSLNFHECAFCHRVGL
PFDFSHKYSGLLCPEHYGKDDYRSHLDPNVLYLVDRFQAIHFDELKTISVKPEMKRKLRLFIDDIYDNYVGLRLKSKKFI
DDLGTWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=34044 SGPB_RS00215 WP_013851388.1 29597..30352(+) (recO) [Streptococcus pasteurianus ATCC 43144]
ATGCAAACTAAAGAAACTTATGGTCTTGTCCTCTATAATCGTAATTATCGTGAGGATGATAAGCTAGTCAAAATTTTTAC
AGAAACCAATGGGAAGCATATGTTTTTTGTTAAACATGCTGGTAAATCTCGGTTTAATTCTGTTATTCAGCCGTTAACGG
CGGCAAAATTTATTTTAAAAATTAATGATACGGGTCTGTCCTTCATTGAAGATTATAAGGAAGTTGAGTCTTTTAAGGAA
ATTAATGCAGATTTGTTTAGATTGTCCTATGCTTCTTATGTGACAGCATTGGCAGATGCAGCTGTGCCAGACGGTGTGGC
AGACCCTCAGTTGTTTACATTTGTTAATAAGACGCTTTCCTTAATGGAAGAGGGACTTGACTACGAAATTTTGACTAATA
TTTTTGAGATTCAACTTTTAGAACGATTTGGTGTTAGTCTTAATTTTCATGAATGTGCTTTTTGTCATCGGGTTGGATTG
CCCTTTGATTTTTCGCATAAATATTCTGGTCTACTTTGTCCAGAGCATTATGGTAAAGATGATTATCGTAGTCATCTTGA
TCCGAATGTGCTGTACCTGGTGGACCGATTTCAAGCCATTCATTTTGATGAATTAAAGACGATTTCAGTTAAGCCTGAGA
TGAAACGAAAATTGCGTTTATTTATTGATGATATTTATGATAATTATGTCGGTCTTCGTTTGAAAAGTAAAAAATTCATT
GATGATTTAGGGACTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-78)

Recombination protein O C terminal (RecO_C)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5X424

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.948

100

0.629

Multiple sequence alignment