Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   VCD_RS00165 Genome accession   NC_012668
Coordinates   28113..28631 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae MJ-1236     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 23113..33631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCD_RS00140 (VCD_001044) rimM 23222..23776 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  VCD_RS00145 (VCD_001045) rpsP 23804..24052 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  VCD_RS00150 (VCD_001046) ffh 24288..25673 (-) 1386 WP_000462720.1 signal recognition particle protein -
  VCD_RS00155 (VCD_001047) - 25886..26680 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  VCD_RS00160 (VCD_001048) - 26763..28043 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  VCD_RS00165 (VCD_001049) luxS 28113..28631 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  VCD_RS00170 (VCD_001050) gshA 28680..30254 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  VCD_RS00175 (VCD_001051) - 30366..33221 (-) 2856 WP_001233047.1 M16 family metallopeptidase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=34043 VCD_RS00165 WP_001130227.1 28113..28631(-) (luxS) [Vibrio cholerae MJ-1236]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=34043 VCD_RS00165 WP_001130227.1 28113..28631(-) (luxS) [Vibrio cholerae MJ-1236]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment