Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   FOB77_RS09830 Genome accession   NZ_CP044091
Coordinates   1854361..1855431 (+) Length   356 a.a.
NCBI ID   WP_000817930.1    Uniprot ID   Q3K1A9
Organism   Streptococcus agalactiae strain FDAARGOS_669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1849361..1860431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB77_RS09815 (FOB77_09815) - 1849851..1851521 (+) 1671 WP_006151537.1 hypothetical protein -
  FOB77_RS09820 (FOB77_09820) - 1851514..1852227 (+) 714 WP_006151858.1 hypothetical protein -
  FOB77_RS09825 (FOB77_09825) - 1852236..1854083 (+) 1848 WP_150371515.1 zinc-ribbon domain-containing protein -
  FOB77_RS09830 (FOB77_09830) xerS 1854361..1855431 (+) 1071 WP_000817930.1 tyrosine recombinase XerS Machinery gene
  FOB77_RS09835 (FOB77_09835) - 1855474..1856412 (-) 939 WP_000620981.1 HAMP domain-containing sensor histidine kinase -
  FOB77_RS09840 (FOB77_09840) braR 1856409..1857077 (-) 669 WP_000076874.1 response regulator transcription factor Regulator
  FOB77_RS09845 (FOB77_09845) - 1857187..1859142 (-) 1956 WP_025197157.1 FtsX-like permease family protein -
  FOB77_RS09850 (FOB77_09850) - 1859144..1859896 (-) 753 WP_000923535.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41361.55 Da        Isoelectric Point: 9.3616

>NTDB_id=340429 FOB77_RS09830 WP_000817930.1 1854361..1855431(+) (xerS) [Streptococcus agalactiae strain FDAARGOS_669]
MKRELLLEKIDELKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFLEWLLDSGVANCHHIAEIELSVLENLTKKDME
AFILYLRERPLLNANTRQNGVSQTTINRTLSALSSLFKYLTEEVENADGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGNETIEFLEYIDCEYQNKLSKRALAFFNKNKERDLAIIALLLASGVRLSEAVNLDLKDINLNVMVIDVTRKGGKRDS
VNVASFAKPYLANYLDIRKNRYKAENQDIALFLSEYRGVPNRIDASSVEKMVAKYSQDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=340429 FOB77_RS09830 WP_000817930.1 1854361..1855431(+) (xerS) [Streptococcus agalactiae strain FDAARGOS_669]
ATGAAACGTGAATTACTACTCGAAAAAATCGATGAACTAAAAGAAATTATGCCTTGGTATGTTCTAGAATACTATCAATC
AAAGCTTTCTGTTCCTTATAGTTTCACAACGCTCTACGAATATTTAAAAGAATATAGACGTTTTCTTGAATGGTTATTGG
ATTCTGGTGTTGCTAATTGTCATCACATTGCAGAAATTGAGCTTTCAGTTTTAGAAAACCTTACTAAAAAAGATATGGAA
GCTTTTATACTATATTTACGAGAACGCCCTTTATTAAATGCTAACACAAGGCAAAATGGGGTGTCTCAAACCACCATTAA
CAGAACTCTATCTGCCTTATCTAGTCTTTTCAAATACCTTACTGAAGAGGTTGAAAATGCTGACGGGGAGCCTTACTTTT
ATCGCAATGTCATGAAAAAAGTCTCAACCAAAAAGAAAAAGGAAACTTTAGCTTCTCGGGCAGAAAATATTAAACAAAAG
TTATTTTTGGGCAATGAAACGATAGAATTCTTAGAGTATATAGATTGTGAATATCAAAACAAACTTTCCAAACGTGCTTT
AGCTTTTTTCAACAAAAATAAAGAGAGAGATTTAGCTATTATTGCTTTGCTACTAGCTTCAGGGGTGCGTCTATCTGAGG
CAGTAAACTTAGATTTAAAGGATATTAACCTTAATGTAATGGTTATTGATGTCACACGAAAAGGGGGGAAAAGGGACTCT
GTCAATGTCGCTAGCTTTGCGAAGCCCTACCTTGCTAATTATTTAGACATCCGTAAAAATAGATACAAAGCAGAAAATCA
GGACATTGCACTATTTTTATCAGAATACCGTGGGGTGCCAAATCGTATTGATGCTTCAAGTGTTGAGAAAATGGTCGCTA
AATATTCCCAGGATTTTAAGGTTCGTGTAACACCTCATAAACTAAGGCATACTCTTGCTACTAGGCTATATGATGCTACA
AAATCTCAAGTATTAGTTAGCCACCAATTAGGTCATGCTTCCACTCAAGTTACTGACCTATATACCCATATTGTTAACGA
TGAACAAAAGAACGCTTTAGATAAACTATAG

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(184-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K1A9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.708

100

0.837

Multiple sequence alignment