Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ETA15_RS13090 Genome accession   NZ_CP035403
Coordinates   2440728..2441495 (-) Length   255 a.a.
NCBI ID   WP_017696274.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2435728..2446495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS13070 (ETA15_13070) ppsR 2435903..2436715 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  ETA15_RS13075 (ETA15_13075) ccpN 2436741..2437379 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ETA15_RS13080 (ETA15_13080) glyS 2437512..2439551 (-) 2040 WP_014480291.1 glycine--tRNA ligase subunit beta -
  ETA15_RS13085 (ETA15_13085) glyQ 2439544..2440431 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ETA15_RS13090 (ETA15_13090) recO 2440728..2441495 (-) 768 WP_017696274.1 DNA repair protein RecO Machinery gene
  ETA15_RS13095 (ETA15_13095) yqzL 2441532..2441675 (-) 144 WP_003230053.1 YqzL family protein -
  ETA15_RS13100 (ETA15_13100) era 2441823..2442728 (-) 906 WP_003230051.1 GTPase Era -
  ETA15_RS13105 (ETA15_13105) - 2442709..2443119 (-) 411 WP_014480293.1 cytidine deaminase -
  ETA15_RS13110 (ETA15_13110) unpK 2443238..2443609 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  ETA15_RS13115 (ETA15_13115) ybeY 2443590..2444063 (-) 474 WP_014480295.1 rRNA maturation RNase YbeY -
  ETA15_RS13120 (ETA15_13120) pgpH 2444064..2446199 (-) 2136 WP_080031083.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29346.03 Da        Isoelectric Point: 8.3080

>NTDB_id=340345 ETA15_RS13090 WP_017696274.1 2440728..2441495(-) (recO) [Bacillus subtilis strain SRCM103581]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKTNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=340345 ETA15_RS13090 WP_017696274.1 2440728..2441495(-) (recO) [Bacillus subtilis strain SRCM103581]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGAC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment