Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   ETA15_RS12745 Genome accession   NZ_CP035403
Coordinates   2384187..2384522 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM103581     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2379187..2389522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS12725 (ETA15_12725) gcvT 2379780..2380868 (-) 1089 WP_017696204.1 glycine cleavage system aminomethyltransferase GcvT -
  ETA15_RS12730 (ETA15_12730) hepAA 2381309..2382982 (+) 1674 WP_017696203.1 SNF2-related protein -
  ETA15_RS12735 (ETA15_12735) yqhG 2383003..2383797 (+) 795 WP_017696202.1 YqhG family protein -
  ETA15_RS12740 (ETA15_12740) sinI 2383980..2384153 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  ETA15_RS12745 (ETA15_12745) sinR 2384187..2384522 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  ETA15_RS12750 (ETA15_12750) tasA 2384615..2385400 (-) 786 WP_017696201.1 biofilm matrix protein TasA -
  ETA15_RS12755 (ETA15_12755) sipW 2385465..2386037 (-) 573 WP_080031082.1 signal peptidase I SipW -
  ETA15_RS12760 (ETA15_12760) tapA 2386021..2386776 (-) 756 WP_017696199.1 amyloid fiber anchoring/assembly protein TapA -
  ETA15_RS12765 (ETA15_12765) yqzG 2387047..2387373 (+) 327 WP_026113671.1 YqzG/YhdC family protein -
  ETA15_RS12770 (ETA15_12770) spoIITA 2387415..2387594 (-) 180 WP_014480252.1 YqzE family protein -
  ETA15_RS12775 (ETA15_12775) comGG 2387665..2388039 (-) 375 WP_017696197.1 ComG operon protein ComGG Machinery gene
  ETA15_RS12780 (ETA15_12780) comGF 2388040..2388423 (-) 384 WP_017696196.1 ComG operon protein ComGF Machinery gene
  ETA15_RS12785 (ETA15_12785) comGE 2388449..2388796 (-) 348 WP_017696195.1 competence type IV pilus minor pilin ComGE Machinery gene
  ETA15_RS12790 (ETA15_12790) comGD 2388780..2389211 (-) 432 WP_017696194.1 competence type IV pilus minor pilin ComGD Machinery gene
  ETA15_RS12795 (ETA15_12795) comGC 2389201..2389497 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=340337 ETA15_RS12745 WP_003226345.1 2384187..2384522(+) (sinR) [Bacillus subtilis strain SRCM103581]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=340337 ETA15_RS12745 WP_003226345.1 2384187..2384522(+) (sinR) [Bacillus subtilis strain SRCM103581]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment