Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ETA15_RS12545 Genome accession   NZ_CP035403
Coordinates   2349559..2350362 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2344559..2355362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS12520 (ETA15_12520) glpQB 2345745..2346476 (-) 732 WP_129093389.1 glycerophosphodiester phosphodiesterase -
  ETA15_RS12525 (ETA15_12525) yqiI 2346486..2347127 (-) 642 WP_129093390.1 N-acetylmuramoyl-L-alanine amidase -
  ETA15_RS12530 (ETA15_12530) - 2347147..2347443 (-) 297 WP_014480225.1 hypothetical protein -
  ETA15_RS12535 (ETA15_12535) - 2347751..2347903 (+) 153 WP_014480226.1 hypothetical protein -
  ETA15_RS12540 (ETA15_12540) yqiG 2347976..2349094 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ETA15_RS12545 (ETA15_12545) spo0A 2349559..2350362 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ETA15_RS12555 (ETA15_12555) spoIVB 2350638..2351918 (-) 1281 WP_017696436.1 SpoIVB peptidase -
  ETA15_RS12560 (ETA15_12560) recN 2352093..2353823 (-) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  ETA15_RS12565 (ETA15_12565) argR 2353860..2354309 (-) 450 WP_017696434.1 arginine repressor ArgR -
  ETA15_RS12570 (ETA15_12570) yqxC 2354407..2355252 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=340334 ETA15_RS12545 WP_003226427.1 2349559..2350362(-) (spo0A) [Bacillus subtilis strain SRCM103581]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=340334 ETA15_RS12545 WP_003226427.1 2349559..2350362(-) (spo0A) [Bacillus subtilis strain SRCM103581]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment