Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ETA15_RS11530 Genome accession   NZ_CP035403
Coordinates   2166534..2167154 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161534..2172154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS11490 (ETA15_11490) ptsA 2162665..2163171 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  ETA15_RS11495 (ETA15_11495) ypqA 2163309..2163728 (+) 420 WP_017696990.1 Hsp20/alpha crystallin family protein -
  ETA15_RS11500 (ETA15_11500) sppG 2163749..2164126 (-) 378 WP_014477159.1 YppG family protein -
  ETA15_RS11505 (ETA15_11505) yppF 2164314..2164502 (+) 189 WP_003230690.1 YppF family protein -
  ETA15_RS11510 (ETA15_11510) yppE 2164541..2164912 (-) 372 WP_017696991.1 YppE family protein -
  ETA15_RS11515 (ETA15_11515) yppD 2164958..2165203 (-) 246 WP_017696992.1 YppD family protein -
  ETA15_RS11520 (ETA15_11520) sspM 2165402..2165506 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ETA15_RS11525 (ETA15_11525) yppC 2165531..2166493 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  ETA15_RS11530 (ETA15_11530) recU 2166534..2167154 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ETA15_RS11535 (ETA15_11535) ponA 2167176..2169920 (+) 2745 WP_017696993.1 PBP1A family penicillin-binding protein -
  ETA15_RS11540 (ETA15_11540) ypoC 2169996..2170490 (-) 495 WP_009967579.1 YpoC family protein -
  ETA15_RS11545 (ETA15_11545) nth 2170487..2171146 (-) 660 WP_009967580.1 endonuclease III -
  ETA15_RS11550 (ETA15_11550) dnaD 2171165..2171863 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=340333 ETA15_RS11530 WP_004399067.1 2166534..2167154(+) (recU) [Bacillus subtilis strain SRCM103581]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=340333 ETA15_RS11530 WP_004399067.1 2166534..2167154(+) (recU) [Bacillus subtilis strain SRCM103581]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment