Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/comD2   Type   Regulator
Locus tag   FOB78_RS10645 Genome accession   NZ_CP044090
Coordinates   2002246..2002545 (+) Length   99 a.a.
NCBI ID   WP_000002567.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_670     
Function   phosphorylation of ComE (predicted from homology)   
Competence regulation

Genomic Context

Location: 1997246..2007545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB78_RS10630 (FOB78_10630) - 1998096..2000279 (+) 2184 WP_000795063.1 PTS transporter subunit IIBC -
  FOB78_RS10635 (FOB78_10635) - 2000333..2001148 (+) 816 WP_001029867.1 endonuclease/exonuclease/phosphatase family protein -
  FOB78_RS10640 (FOB78_10640) comE/blpR 2001425..2002177 (+) 753 WP_001019932.1 response regulator transcription factor Regulator
  FOB78_RS10645 (FOB78_10645) comD/comD2 2002246..2002545 (+) 300 WP_000002567.1 GHKL domain-containing protein Regulator
  FOB78_RS10650 (FOB78_10650) - 2002668..2003516 (+) 849 WP_000926594.1 ABC transporter ATP-binding protein -
  FOB78_RS10655 (FOB78_10655) - 2003522..2004676 (+) 1155 WP_000623418.1 ABC transporter permease subunit -
  FOB78_RS11905 (FOB78_10660) - 2004671..2004853 (-) 183 WP_001866975.1 hypothetical protein -
  FOB78_RS10665 (FOB78_10665) - 2004905..2005939 (+) 1035 WP_000369172.1 hypothetical protein -
  FOB78_RS10670 (FOB78_10670) - 2006186..2006611 (+) 426 WP_000823120.1 PTS mannose transporter subunit IIA -
  FOB78_RS10675 (FOB78_10675) - 2006629..2007120 (+) 492 WP_000632643.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 11343.79 Da        Isoelectric Point: 5.0958

>NTDB_id=340327 FOB78_RS10645 WP_000002567.1 2002246..2002545(+) (comD/comD2) [Streptococcus agalactiae strain FDAARGOS_670]
MANMIDYSHHIEVSLETDEPKIAMSYFTLNHKQIFIIENSIVEERIDASRLFGYGASSKGEDRGLGLYNVMKVIDRYPNA
SISTNSEQHTFRQGLEIIF

Nucleotide


Download         Length: 300 bp        

>NTDB_id=340327 FOB78_RS10645 WP_000002567.1 2002246..2002545(+) (comD/comD2) [Streptococcus agalactiae strain FDAARGOS_670]
TTGGCTAATATGATAGATTATAGCCACCATATTGAAGTTTCTTTAGAGACAGATGAACCTAAGATAGCCATGTCTTATTT
TACATTAAACCATAAGCAAATTTTTATCATAGAAAATTCGATAGTCGAGGAAAGAATAGATGCTTCACGTTTGTTTGGTT
ATGGAGCAAGTAGCAAGGGAGAAGATAGAGGGTTAGGCCTTTATAATGTCATGAAAGTTATTGACCGTTATCCCAATGCA
TCTATTAGTACAAATAGTGAACAACATACTTTCCGTCAGGGCTTAGAAATAATCTTTTAG

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(11-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/comD2 Streptococcus equinus JB1

40.86

93.939

0.384
  comD/comD3 Streptococcus equinus JB1

38.71

93.939

0.364

Multiple sequence alignment