Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ETA15_RS05125 Genome accession   NZ_CP035403
Coordinates   985637..986431 (+) Length   264 a.a.
NCBI ID   WP_017697678.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103581     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 983003..989923 985637..986431 within 0


Gene organization within MGE regions


Location: 983003..989923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS05105 (ETA15_05105) - 983003..984153 (+) 1151 WP_087614170.1 IS3 family transposase -
  ETA15_RS05110 (ETA15_05110) yfhD 984215..984406 (-) 192 WP_014479215.1 YfhD family protein -
  ETA15_RS05115 (ETA15_05115) yfhE 984473..984583 (-) 111 WP_003223230.1 YfhE family protein -
  ETA15_RS05120 (ETA15_05120) yfhF 984638..985548 (-) 911 Protein_963 TIGR01777 family oxidoreductase -
  ETA15_RS05125 (ETA15_05125) recX 985637..986431 (+) 795 WP_017697678.1 recombination regulator RecX Regulator
  ETA15_RS05130 (ETA15_05130) yfhH 986433..986747 (+) 315 WP_017697679.1 YfhH family protein -
  ETA15_RS05135 (ETA15_05135) yfhI 986891..988084 (+) 1194 WP_017697680.1 MFS transporter -
  ETA15_RS05140 (ETA15_05140) sspK 988116..988268 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  ETA15_RS05145 (ETA15_05145) yfhJ 988393..988662 (+) 270 WP_003243789.1 YfhJ family protein -
  ETA15_RS05150 (ETA15_05150) - 988773..989923 (+) 1151 WP_087614160.1 IS3 family transposase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30998.18 Da        Isoelectric Point: 6.6687

>NTDB_id=340310 ETA15_RS05125 WP_017697678.1 985637..986431(+) (recX) [Bacillus subtilis strain SRCM103581]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEEN

Nucleotide


Download         Length: 795 bp        

>NTDB_id=340310 ETA15_RS05125 WP_017697678.1 985637..986431(+) (recX) [Bacillus subtilis strain SRCM103581]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGGGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCAACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTACGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGAACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.62

99.621

0.992

Multiple sequence alignment