Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   FOB78_RS05035 Genome accession   NZ_CP044090
Coordinates   1004998..1005807 (-) Length   269 a.a.
NCBI ID   WP_001289497.1    Uniprot ID   Q8E0K9
Organism   Streptococcus agalactiae strain FDAARGOS_670     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 999998..1010807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB78_RS05020 (FOB78_05020) smc 1000218..1003757 (-) 3540 WP_000478794.1 chromosome segregation protein SMC -
  FOB78_RS05025 (FOB78_05025) rnc 1003765..1004451 (-) 687 WP_000661526.1 ribonuclease III -
  FOB78_RS05030 (FOB78_05030) - 1004627..1004995 (-) 369 WP_000719384.1 YbaN family protein -
  FOB78_RS05035 (FOB78_05035) vicX 1004998..1005807 (-) 810 WP_001289497.1 MBL fold metallo-hydrolase Regulator
  FOB78_RS05040 (FOB78_05040) vicK 1005811..1007160 (-) 1350 WP_001065468.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FOB78_RS05045 (FOB78_05045) yycF 1007153..1007863 (-) 711 WP_000722052.1 response regulator YycF -
  FOB78_RS05050 (FOB78_05050) - 1008203..1008958 (+) 756 WP_000053145.1 amino acid ABC transporter ATP-binding protein -
  FOB78_RS05055 (FOB78_05055) - 1008970..1009770 (+) 801 WP_000946165.1 transporter substrate-binding domain-containing protein -
  FOB78_RS05060 (FOB78_05060) - 1009783..1010478 (+) 696 WP_000173642.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30243.22 Da        Isoelectric Point: 6.2265

>NTDB_id=340266 FOB78_RS05035 WP_001289497.1 1004998..1005807(-) (vicX) [Streptococcus agalactiae strain FDAARGOS_670]
MSEIGFKYSILASGSTGNCFYIETPQKRLLIDAGLTGKKVTSLLAEINRKPEDLDAILVTHEHSDHIKGVGVLARKYHLD
IYANEQTWKVMDERNMLGKVDVSQKHVFGRGKTLTFGDLDIESFGVSHDAVDPQFYRMMKDDKSFVMLTDTGYVSDRMAG
LIENADGYLIESNHDIEILRSGSYPWTLKQRILSDKGHLSNEDGSETMIRTIGNRTKHIYLGHLSKENNIKELAHMTMEN
NLMRADFGVGTDFSVHDTSPDSATPLTRI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=340266 FOB78_RS05035 WP_001289497.1 1004998..1005807(-) (vicX) [Streptococcus agalactiae strain FDAARGOS_670]
ATGTCAGAAATAGGATTTAAATATAGTATCTTAGCTTCAGGTTCAACTGGAAATTGTTTTTATATTGAGACACCCCAAAA
ACGTCTTTTAATTGACGCTGGTTTAACAGGCAAGAAAGTGACTAGCCTTCTTGCAGAAATTAATCGTAAACCAGAAGATT
TAGATGCTATACTAGTTACCCATGAACATTCTGACCACATTAAAGGTGTTGGCGTATTGGCTAGGAAATATCACCTTGAT
ATTTATGCCAATGAGCAGACGTGGAAAGTTATGGATGAGCGTAACATGTTAGGCAAAGTTGATGTTAGTCAAAAGCATGT
TTTTGGACGCGGTAAAACCTTAACTTTCGGGGATTTAGATATTGAGAGCTTTGGTGTAAGTCATGATGCTGTGGATCCCC
AATTTTACCGTATGATGAAAGATGATAAGAGCTTTGTGATGTTGACAGATACAGGATATGTTAGCGACCGAATGGCAGGC
TTGATTGAGAATGCAGATGGTTATTTGATCGAGTCAAATCACGACATTGAGATTCTACGTTCGGGTTCTTATCCTTGGAC
ACTTAAGCAACGTATTTTATCAGATAAAGGACATTTATCTAATGAAGATGGTTCAGAAACCATGATTCGCACTATAGGTA
ACCGTACTAAACACATCTATTTAGGACACTTGAGTAAGGAAAATAATATTAAGGAACTTGCTCACATGACTATGGAAAAC
AATTTAATGAGAGCTGACTTTGGTGTGGGCACAGATTTTTCTGTTCACGATACTTCACCTGATTCAGCTACCCCACTGAC
GAGGATTTAA

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8E0K9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment