Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ES969_RS11605 Genome accession   NZ_CP035402
Coordinates   2146492..2147112 (+) Length   206 a.a.
NCBI ID   WP_014480105.1    Uniprot ID   A0A0D1KQW4
Organism   Bacillus subtilis strain SRCM103576     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2141492..2152112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES969_RS11565 (ES969_11565) ptsA 2142623..2143129 (-) 507 WP_103330270.1 PTS glucose transporter subunit IIA -
  ES969_RS11570 (ES969_11570) ypqA 2143267..2143686 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  ES969_RS11575 (ES969_11575) sppG 2143707..2144084 (-) 378 WP_015251832.1 YppG family protein -
  ES969_RS11580 (ES969_11580) yppF 2144272..2144460 (+) 189 WP_003230690.1 YppF family protein -
  ES969_RS11585 (ES969_11585) yppE 2144499..2144870 (-) 372 WP_021481525.1 YppE family protein -
  ES969_RS11590 (ES969_11590) yppD 2144916..2145161 (-) 246 WP_021481526.1 DUF5446 family protein -
  ES969_RS11595 (ES969_11595) sspM 2145360..2145464 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ES969_RS11600 (ES969_11600) yppC 2145489..2146451 (-) 963 WP_033881326.1 DUF2515 domain-containing protein -
  ES969_RS11605 (ES969_11605) recU 2146492..2147112 (+) 621 WP_014480105.1 Holliday junction resolvase RecU Machinery gene
  ES969_RS11610 (ES969_11610) ponA 2147134..2149878 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  ES969_RS11615 (ES969_11615) ypoC 2149954..2150448 (-) 495 WP_009967579.1 YpoC family protein -
  ES969_RS11620 (ES969_11620) nth 2150445..2151104 (-) 660 WP_009967580.1 endonuclease III -
  ES969_RS11625 (ES969_11625) dnaD 2151123..2151821 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 24019.18 Da        Isoelectric Point: 9.6240

>NTDB_id=340254 ES969_RS11605 WP_014480105.1 2146492..2147112(+) (recU) [Bacillus subtilis strain SRCM103576]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPIFLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=340254 ES969_RS11605 WP_014480105.1 2146492..2147112(+) (recU) [Bacillus subtilis strain SRCM103576]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTATATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTTTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCACCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KQW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment