Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   ES969_RS07975 Genome accession   NZ_CP035402
Coordinates   1500421..1500699 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM103576     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1495421..1505699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES969_RS07955 (ES969_07955) panEB 1496608..1497519 (+) 912 WP_014479685.1 ketopantoate reductase family protein -
  ES969_RS07960 (ES969_07960) ampS 1497553..1498785 (-) 1233 WP_003232341.1 aminopeptidase -
  ES969_RS07965 (ES969_07965) ykpC 1498895..1499029 (-) 135 WP_003238865.1 protein YkpC -
  ES969_RS07970 (ES969_07970) mreBH 1499130..1500137 (-) 1008 WP_026113694.1 cell shape-determining protein MreBH -
  ES969_RS07975 (ES969_07975) abrB 1500421..1500699 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  ES969_RS07980 (ES969_07980) kinC 1500889..1502175 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  ES969_RS07985 (ES969_07985) ykqA 1502191..1503024 (+) 834 WP_014479687.1 gamma-glutamylcyclotransferase -
  ES969_RS07990 (ES969_07990) ktrC 1503087..1503752 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  ES969_RS07995 (ES969_07995) ade 1503907..1505640 (+) 1734 WP_069837481.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=340249 ES969_RS07975 WP_003244728.1 1500421..1500699(+) (abrB) [Bacillus subtilis strain SRCM103576]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=340249 ES969_RS07975 WP_003244728.1 1500421..1500699(+) (abrB) [Bacillus subtilis strain SRCM103576]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment