Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   FOB78_RS02410 Genome accession   NZ_CP044090
Coordinates   463929..466127 (+) Length   732 a.a.
NCBI ID   WP_000622237.1    Uniprot ID   Q8DZA1
Organism   Streptococcus agalactiae strain FDAARGOS_670     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 458929..471127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB78_RS02380 (FOB78_02380) - 459052..459228 (-) 177 WP_000239229.1 DUF3042 family protein -
  FOB78_RS02385 (FOB78_02385) miaA 459339..460229 (+) 891 WP_001226482.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  FOB78_RS02390 (FOB78_02390) hflX 460320..461558 (+) 1239 WP_000573348.1 GTPase HflX -
  FOB78_RS02395 (FOB78_02395) - 461551..462198 (+) 648 WP_000568323.1 cystathionine beta-lyase -
  FOB78_RS02400 (FOB78_02400) rnz 462240..463169 (+) 930 WP_000405386.1 ribonuclease Z -
  FOB78_RS02405 (FOB78_02405) - 463171..463932 (+) 762 WP_000124583.1 SDR family oxidoreductase -
  FOB78_RS02410 (FOB78_02410) recJ 463929..466127 (+) 2199 WP_000622237.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  FOB78_RS02420 (FOB78_02420) - 466279..468843 (+) 2565 WP_001247520.1 GBS Bsp-like repeat-containing protein -
  FOB78_RS02425 (FOB78_02425) - 468966..469484 (+) 519 WP_000365343.1 adenine phosphoribosyltransferase -
  FOB78_RS02430 (FOB78_02430) - 469602..470282 (+) 681 WP_000221657.1 DnaD domain-containing protein -
  FOB78_RS02435 (FOB78_02435) - 470386..471069 (+) 684 WP_000365679.1 tRNA (adenine(22)-N(1))-methyltransferase TrmK -

Sequence

Protein


Download         Length: 732 a.a.        Molecular weight: 82278.94 Da        Isoelectric Point: 4.5538

>NTDB_id=340246 FOB78_RS02410 WP_000622237.1 463929..466127(+) (recJ) [Streptococcus agalactiae strain FDAARGOS_670]
MISAKYSWVLNNQKPDAGFFEASKKEKISEAVASLIYSRGIKTSAELHHFLQTNLENLHDPYLLNDMDKAVNRIRRAIEN
NETILVYGDYDADGMTSASIMKEALDMMGAEVQVYLPNRFTDGYGPNQSVYKYFIEQQDVSLIITVDNGVAGHEAITYAQ
NQGVDVVVTDHHSMPADLPCAYAIIHPEHPDANYPFPYLAGCGVAFKVACALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKAGLEVMKDSERIGLQELISLSNIDLKTLNEETIGFKIAPQLNALGRLDDPNPAIELLTGFDDEESQAIAQMIDQKN
EERKEIVQTIFDQAMQMLDQTKPVQVLAKENWHPGVLGIVAGRILERTGQPVIVLNIEDGIAKGSARSVEALDIFQAFDQ
HRELFIAFGGHSGAAGMTLEESKVGDLSQVLCDYISKKQLDMSQKKTLTIDSELRFDELSLDTVRDFEKLAPFGMDNKKP
VFLLKDFKVSQARVMGQNGAHLKLKLEQDGQALDLVAFNMGSQLQEFQQAQHLELAVTLSVNQWNGATTLQLMLEDARVD
GIQLFDIRSKASSLPHGVPILSQEEQSKEVILLTVPDHPQELKQMTQGKQFDAIYFKNEIPKNYFISGYGTRDQFASLYK
TIYQFPEFDVRYKLKELSSYLHIPDILLIKMIQIFEELHFVTITEGIMTVNKEAEKRDISESQIYQELKETVKFQELMAL
GTPKEIYDFMMS

Nucleotide


Download         Length: 2199 bp        

>NTDB_id=340246 FOB78_RS02410 WP_000622237.1 463929..466127(+) (recJ) [Streptococcus agalactiae strain FDAARGOS_670]
ATGATATCTGCTAAGTATAGTTGGGTCCTCAATAACCAAAAGCCAGACGCTGGCTTTTTTGAGGCTTCAAAAAAAGAAAA
GATAAGTGAAGCGGTGGCTTCCTTAATTTATTCGCGAGGTATTAAGACATCAGCGGAATTACATCATTTTTTACAAACTA
ATTTGGAAAATCTCCATGATCCTTATTTGTTAAATGATATGGATAAAGCTGTTAATCGTATTAGACGAGCTATTGAAAAT
AATGAAACTATTTTAGTTTATGGAGACTATGATGCTGATGGAATGACATCAGCATCAATCATGAAAGAAGCATTAGATAT
GATGGGAGCTGAAGTCCAGGTTTATCTCCCAAATCGCTTTACAGATGGTTACGGTCCCAATCAAAGTGTTTATAAATATT
TTATTGAACAACAAGATGTTTCATTAATCATTACGGTTGATAATGGTGTGGCAGGGCATGAAGCAATTACATATGCTCAA
AATCAAGGTGTGGACGTGGTAGTTACTGATCATCACAGTATGCCAGCAGATTTACCTTGTGCTTATGCTATTATTCACCC
AGAACATCCTGATGCTAATTATCCATTTCCTTATTTAGCAGGGTGTGGTGTTGCTTTCAAAGTAGCTTGTGCTCTCTTAG
AAACAATCCCGACAGAAATGTTGGATTTGGTTGCTATTGGGACGATTGCAGATATGGTTAGCCTAACTGATGAAAATCGT
ATCATGGTAAAAGCTGGACTTGAAGTTATGAAAGATAGTGAAAGAATAGGCTTACAGGAGCTAATATCTTTATCAAATAT
TGATTTAAAAACACTAAATGAAGAAACTATTGGATTTAAAATTGCTCCACAATTAAACGCTTTAGGAAGACTTGATGACC
CTAATCCAGCTATTGAATTACTAACAGGGTTTGATGATGAAGAATCTCAAGCAATAGCCCAAATGATTGATCAAAAAAAT
GAAGAGCGCAAAGAAATCGTTCAAACTATCTTTGACCAAGCTATGCAAATGCTTGATCAAACAAAGCCTGTACAAGTTTT
AGCAAAAGAAAATTGGCATCCAGGGGTTTTAGGTATTGTGGCGGGTCGTATTTTAGAGAGAACTGGACAACCTGTTATTG
TTTTGAATATTGAAGATGGTATTGCTAAAGGAAGTGCCAGAAGTGTAGAAGCACTTGATATTTTTCAAGCTTTTGACCAG
CATCGAGAATTATTCATTGCTTTTGGAGGTCACAGCGGAGCAGCAGGCATGACTTTAGAGGAAAGTAAAGTAGGTGATCT
TTCTCAAGTTTTATGTGACTATATCTCTAAAAAACAATTGGACATGAGTCAGAAAAAAACTCTGACAATTGATAGTGAGC
TACGTTTTGACGAACTTAGTTTAGACACTGTTAGAGATTTTGAAAAGTTAGCGCCATTTGGAATGGATAATAAAAAACCA
GTCTTTTTGTTAAAAGATTTTAAAGTGAGTCAAGCCAGAGTCATGGGGCAAAACGGTGCTCATCTGAAATTAAAACTAGA
ACAAGATGGACAAGCACTTGATTTGGTAGCATTTAATATGGGGAGTCAACTACAAGAGTTCCAACAAGCACAACATTTGG
AGTTAGCTGTCACTTTATCTGTTAATCAATGGAATGGTGCCACAACCCTACAATTAATGTTGGAGGATGCGCGTGTAGAC
GGTATTCAATTATTTGATATTAGAAGCAAAGCAAGTAGTTTACCTCATGGAGTGCCAATCCTGTCTCAAGAAGAGCAGAG
CAAAGAAGTTATTCTTTTGACTGTTCCCGATCATCCACAAGAATTAAAACAAATGACTCAAGGTAAACAGTTTGATGCCA
TCTATTTTAAAAATGAGATACCAAAAAATTATTTTATATCTGGTTATGGTACACGTGATCAGTTTGCTAGTTTATATAAA
ACAATATATCAATTCCCAGAATTTGACGTTCGTTATAAGTTAAAAGAGCTCAGTTCCTACCTTCATATCCCTGATATTTT
ATTAATTAAAATGATTCAAATTTTTGAAGAACTACATTTTGTTACGATTACAGAAGGGATTATGACAGTCAATAAAGAAG
CAGAAAAGCGAGATATCTCTGAGAGTCAAATTTATCAAGAATTAAAAGAGACAGTTAAGTTTCAAGAATTAATGGCTTTA
GGGACACCTAAAGAAATATATGATTTTATGATGAGTTGA

Domains

Predicted by InterProScan.

RecJ OB domain (RecJ_OB)

(450-556)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-726)

DHH family (DHH)

(83-228)

DHHA1 domain (DHHA1)

(317-433)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DZA1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

64.858

100

0.653
  recJ Bacillus subtilis subsp. subtilis str. 168

35.881

100

0.378