Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ES969_RS02005 Genome accession   NZ_CP035402
Coordinates   369811..370260 (-) Length   149 a.a.
NCBI ID   WP_124060108.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103576     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 364811..375260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES969_RS01965 (ES969_01965) - 365151..365348 (+) 198 WP_121509395.1 hypothetical protein -
  ES969_RS01970 (ES969_01970) yckC 365368..365823 (+) 456 WP_014478793.1 RDD family protein -
  ES969_RS01975 (ES969_01975) yckD 365905..366237 (+) 333 WP_014478794.1 YckD family protein -
  ES969_RS01980 (ES969_01980) - 366365..366787 (+) 423 WP_014478795.1 MarR family transcriptional regulator -
  ES969_RS01985 (ES969_01985) - 366775..367095 (+) 321 WP_014478796.1 DUF3147 family protein -
  ES969_RS01990 (ES969_01990) - 367114..367843 (+) 730 Protein_341 AAA family ATPase -
  ES969_RS01995 (ES969_01995) bglC 367916..369349 (+) 1434 WP_129133868.1 6-phospho-beta-glucosidase -
  ES969_RS02000 (ES969_02000) nin/comJ 369386..369784 (-) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  ES969_RS02005 (ES969_02005) nucA/comI 369811..370260 (-) 450 WP_124060108.1 DNA-entry nuclease Machinery gene
  ES969_RS02010 (ES969_02010) tlpC 370428..372149 (-) 1722 WP_129133869.1 methyl-accepting chemotaxis protein TlpC -
  ES969_RS02015 (ES969_02015) hxlB 372260..372817 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  ES969_RS02020 (ES969_02020) hxlA 372823..373455 (-) 633 WP_122895017.1 3-hexulose-6-phosphate synthase -
  ES969_RS02025 (ES969_02025) hxlR 373687..374049 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16456.39 Da        Isoelectric Point: 4.5282

>NTDB_id=340226 ES969_RS02005 WP_124060108.1 369811..370260(-) (nucA/comI) [Bacillus subtilis strain SRCM103576]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETISFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=340226 ES969_RS02005 WP_124060108.1 369811..370260(-) (nucA/comI) [Bacillus subtilis strain SRCM103576]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCTCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment