Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PGTDC60_RS03575 Genome accession   NC_015571
Coordinates   855927..856619 (-) Length   230 a.a.
NCBI ID   WP_005875233.1    Uniprot ID   -
Organism   Porphyromonas gingivalis TDC60     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 850927..861619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGTDC60_RS03565 (PGTDC60_0817) - 851229..852920 (+) 1692 WP_013815680.1 alkaline phosphatase -
  PGTDC60_RS11235 (PGTDC60_0819) - 853489..853638 (-) 150 WP_013815682.1 hypothetical protein -
  PGTDC60_RS03570 (PGTDC60_0821) hcp 854050..855702 (-) 1653 WP_013815684.1 hydroxylamine reductase -
  PGTDC60_RS03575 (PGTDC60_0822) radC 855927..856619 (-) 693 WP_005875233.1 DNA repair protein RadC Machinery gene
  PGTDC60_RS03585 (PGTDC60_0824) - 857624..860830 (+) 3207 WP_043890030.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25521.49 Da        Isoelectric Point: 7.0538

>NTDB_id=34022 PGTDC60_RS03575 WP_005875233.1 855927..856619(-) (radC) [Porphyromonas gingivalis TDC60]
MEKMTIKQLHESDRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQELTGSFRGMG
PAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWVLLLNQSGKIISMENLSRGGVSETSADVR
LIMHKAVSHLASAIILAHNHPSGTVRPSEQDIQLTQRVQKAATLLGFRLNDHLIIGDDGAYFSFADEGLL

Nucleotide


Download         Length: 693 bp        

>NTDB_id=34022 PGTDC60_RS03575 WP_005875233.1 855927..856619(-) (radC) [Porphyromonas gingivalis TDC60]
ATGGAGAAAATGACTATCAAGCAGCTGCACGAATCCGATCGCCCCCGTGAGAAAATGATCCGACTCGGTGCTCGCTGCCT
GACCGATGCCGAACTGCTGGCCATCCTCATCGGATCGGGTAATGACCGGCAAACAGCCATCCAACTGGCTCAAGAGATTC
TGGCCAAGATGGATAACAGCCTGCCGCGTCTGGCCAAATGCGACATACAAGAGCTGACCGGTAGCTTCCGAGGTATGGGA
CCGGCAAAAGCAGTCACCGTGATGGCAGCAATGGAACTGTCCCGCCGTATCCCTTCGCAAGAGATGCCCCGCAGAGAATC
CATTACCGATAGTCGAATGGCCTATCGAACTATAAGCCCATTTCTCACAGACCTGCCGCAGGAAGAAATGTGGGTGTTAC
TCCTCAACCAAAGCGGAAAGATAATCAGCATGGAGAACCTTAGCCGAGGAGGTGTATCGGAGACTTCGGCCGATGTCCGT
CTGATCATGCACAAAGCCGTCTCTCATCTTGCCTCGGCAATCATTCTGGCACACAATCATCCTTCAGGAACGGTACGCCC
AAGCGAACAGGATATTCAGCTTACTCAAAGGGTGCAAAAGGCTGCGACATTGCTCGGATTTCGACTGAACGACCATCTGA
TCATCGGTGACGATGGGGCATATTTCAGTTTCGCTGACGAAGGCCTTCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(109-229)

UPF0758 N-terminal (UPF0758_N)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

39.171

94.348

0.37

Multiple sequence alignment