Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   FOB71_RS00275 Genome accession   NZ_CP044068
Coordinates   63841..64686 (+) Length   281 a.a.
NCBI ID   WP_017419901.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FDAARGOS_663     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 58841..69686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB71_RS00250 (FOB71_00245) - 58861..59070 (-) 210 WP_011082075.1 DUF3283 family protein -
  FOB71_RS00255 (FOB71_00250) - 59229..61169 (-) 1941 WP_017419897.1 ATP-binding protein -
  FOB71_RS00260 (FOB71_00255) - 61245..62000 (+) 756 WP_017419898.1 ABC transporter substrate-binding protein -
  FOB71_RS00265 (FOB71_00260) ribA 62045..63100 (-) 1056 WP_017419899.1 GTP cyclohydrolase II -
  FOB71_RS00270 (FOB71_00265) - 63294..63491 (-) 198 WP_017419900.1 PA3496 family putative envelope integrity protein -
  FOB71_RS00275 (FOB71_00270) amiE 63841..64686 (+) 846 WP_017419901.1 ABC transporter ATP-binding protein Regulator
  FOB71_RS00280 (FOB71_00275) - 64689..65621 (+) 933 WP_017419902.1 ATP-binding cassette domain-containing protein -
  FOB71_RS00285 (FOB71_00280) - 65621..66088 (+) 468 WP_017419903.1 hypothetical protein -
  FOB71_RS00290 (FOB71_00285) - 66442..68412 (-) 1971 WP_011082067.1 replication initiator protein RctB domain-containing protein -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 31615.20 Da        Isoelectric Point: 6.4351

>NTDB_id=340192 FOB71_RS00275 WP_017419901.1 63841..64686(+) (amiE) [Vibrio vulnificus strain FDAARGOS_663]
MSVFHADKAFHPDPVLQVRNLCVDYITDNGDFNAVKSVSFDIGRGEIFGLAGESGCGKSTIAFAINRLHKPPAFISGGEI
LFEGRNLLALSDQALSVLRWSEIAMVFQSAMNSLNPVLTIEEQFADVLRHHSGFSNTQAKDRAEKLLDLVNIPRHRLSEY
PHQFSGGMRQRLVIAIALSLNPKLIIMDEPTTALDVVVQREILQQIYQLREEFGFSVLFITHDLALMSQLCDRIAIMRHG
EIVEVDLSYQIRNHPKHPYTQKLWSSFPNIHDVHSTVEQGA

Nucleotide


Download         Length: 846 bp        

>NTDB_id=340192 FOB71_RS00275 WP_017419901.1 63841..64686(+) (amiE) [Vibrio vulnificus strain FDAARGOS_663]
ATGAGTGTGTTTCACGCTGACAAAGCGTTCCATCCTGATCCCGTGTTGCAGGTTAGGAATTTGTGTGTCGATTACATCAC
CGACAACGGCGATTTCAATGCGGTTAAGTCCGTGAGCTTCGATATTGGTCGAGGGGAGATTTTTGGCCTCGCAGGCGAAT
CGGGGTGTGGAAAAAGTACCATTGCCTTTGCAATCAATCGCCTTCACAAACCACCCGCGTTTATCTCTGGGGGAGAAATT
CTGTTTGAAGGTCGCAATTTACTGGCGTTGTCCGACCAAGCTCTGAGCGTGTTGCGTTGGAGCGAAATTGCCATGGTGTT
TCAAAGTGCGATGAATTCGCTCAATCCCGTGCTGACCATTGAGGAGCAATTTGCCGATGTCCTTCGCCACCACAGCGGTT
TTTCCAACACTCAGGCCAAAGATCGAGCAGAAAAGCTGCTCGATCTGGTCAATATTCCCCGTCACCGCTTAAGTGAATAC
CCACACCAGTTTAGTGGCGGGATGCGCCAGCGTTTGGTGATCGCGATTGCACTGTCTCTCAATCCGAAGTTGATCATCAT
GGATGAGCCCACCACGGCGCTCGATGTGGTGGTGCAACGCGAGATCCTTCAACAAATCTATCAGTTGCGCGAAGAGTTTG
GTTTTTCAGTGCTCTTTATCACTCATGATCTTGCCCTGATGAGTCAACTGTGTGATCGCATTGCCATCATGCGTCATGGC
GAGATCGTTGAAGTGGATCTTTCCTATCAGATCCGCAACCACCCGAAGCACCCATACACTCAGAAACTTTGGTCCTCTTT
TCCCAATATTCATGATGTGCATAGCACCGTCGAGCAAGGAGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(36-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

41.762

92.883

0.388
  amiE Streptococcus thermophilus LMG 18311

41.379

92.883

0.384
  amiE Streptococcus thermophilus LMD-9

41.379

92.883

0.384
  oppD Streptococcus mutans UA159

40.154

92.171

0.37

Multiple sequence alignment