Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FOB75_RS15930 | Genome accession | NZ_CP044062 |
| Coordinates | 3124611..3125036 (-) | Length | 141 a.a. |
| NCBI ID | WP_025533029.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain FDAARGOS_667 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3119611..3130036
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOB75_RS15910 (FOB75_15910) | coaE | 3120124..3120738 (-) | 615 | WP_021450019.1 | dephospho-CoA kinase | - |
| FOB75_RS15915 (FOB75_15915) | pilD | 3120739..3121608 (-) | 870 | WP_150334548.1 | A24 family peptidase | Machinery gene |
| FOB75_RS15920 (FOB75_15920) | pilC | 3121673..3122896 (-) | 1224 | WP_005462561.1 | type II secretion system F family protein | Machinery gene |
| FOB75_RS15925 (FOB75_15925) | pilB | 3122921..3124606 (-) | 1686 | WP_150334549.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FOB75_RS15930 (FOB75_15930) | pilA | 3124611..3125036 (-) | 426 | WP_025533029.1 | type IV pilin protein | Machinery gene |
| FOB75_RS15935 (FOB75_15935) | nadC | 3125299..3126186 (-) | 888 | WP_025523107.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FOB75_RS15940 (FOB75_15940) | ampD | 3126279..3126830 (+) | 552 | WP_025536234.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FOB75_RS15945 (FOB75_15945) | pdhR | 3127236..3128003 (+) | 768 | WP_005462576.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14695.72 Da Isoelectric Point: 9.4846
>NTDB_id=340187 FOB75_RS15930 WP_025533029.1 3124611..3125036(-) (pilA) [Vibrio parahaemolyticus strain FDAARGOS_667]
MKNSKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKNYVKKSEAAAGMGTVRALLTNIDMYIQENGSFPTTGKLADLGAS
AGMNTLGTIALTQDGSVSEAGSVAFNFGSNATLNSTNITYTRSASGWSCNNTTGQTIKSCN
MKNSKQKKQQGFTLIELMIVVAIIGVLSAVAIPAYKNYVKKSEAAAGMGTVRALLTNIDMYIQENGSFPTTGKLADLGAS
AGMNTLGTIALTQDGSVSEAGSVAFNFGSNATLNSTNITYTRSASGWSCNNTTGQTIKSCN
Nucleotide
Download Length: 426 bp
>NTDB_id=340187 FOB75_RS15930 WP_025533029.1 3124611..3125036(-) (pilA) [Vibrio parahaemolyticus strain FDAARGOS_667]
ATGAAAAACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTAATGATTGTCGTCGCGATTATTGGCGTATT
ATCAGCTGTGGCAATTCCCGCTTACAAAAACTATGTAAAAAAATCTGAAGCTGCTGCTGGAATGGGCACAGTACGTGCTC
TTTTAACTAATATTGATATGTACATTCAAGAAAATGGCTCATTTCCCACAACAGGTAAACTTGCAGATCTTGGAGCCTCT
GCAGGTATGAACACCCTTGGTACAATAGCATTGACTCAAGATGGAAGCGTCTCAGAAGCTGGAAGCGTTGCATTTAACTT
CGGCAGTAACGCAACACTAAATAGTACAAATATCACATATACTCGAAGTGCCTCTGGCTGGTCTTGTAATAACACTACAG
GACAAACTATTAAAAGCTGTAATTAA
ATGAAAAACAGTAAACAGAAAAAACAGCAAGGTTTTACCTTGATTGAATTAATGATTGTCGTCGCGATTATTGGCGTATT
ATCAGCTGTGGCAATTCCCGCTTACAAAAACTATGTAAAAAAATCTGAAGCTGCTGCTGGAATGGGCACAGTACGTGCTC
TTTTAACTAATATTGATATGTACATTCAAGAAAATGGCTCATTTCCCACAACAGGTAAACTTGCAGATCTTGGAGCCTCT
GCAGGTATGAACACCCTTGGTACAATAGCATTGACTCAAGATGGAAGCGTCTCAGAAGCTGGAAGCGTTGCATTTAACTT
CGGCAGTAACGCAACACTAAATAGTACAAATATCACATATACTCGAAGTGCCTCTGGCTGGTCTTGTAATAACACTACAG
GACAAACTATTAAAAGCTGTAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
44.371 |
100 |
0.475 |
| pilA | Vibrio cholerae strain A1552 |
44.371 |
100 |
0.475 |
| pilA | Vibrio cholerae C6706 |
44.371 |
100 |
0.475 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
50.376 |
94.326 |
0.475 |
| pilA | Pseudomonas aeruginosa PAK |
41.912 |
96.454 |
0.404 |