Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ETA19_RS12780 Genome accession   NZ_CP035401
Coordinates   2472254..2473021 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain SRCM103837     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2467254..2478021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA19_RS12760 (ETA19_12760) ppsR 2467429..2468241 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  ETA19_RS12765 (ETA19_12765) ccpN 2468267..2468905 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ETA19_RS12770 (ETA19_12770) glyS 2469038..2471077 (-) 2040 WP_128993161.1 glycine--tRNA ligase subunit beta -
  ETA19_RS12775 (ETA19_12775) glyQ 2471070..2471957 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ETA19_RS12780 (ETA19_12780) recO 2472254..2473021 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  ETA19_RS12785 (ETA19_12785) yqzL 2473058..2473201 (-) 144 WP_003230053.1 YqzL family protein -
  ETA19_RS12790 (ETA19_12790) era 2473349..2474254 (-) 906 WP_003230051.1 GTPase Era -
  ETA19_RS12795 (ETA19_12795) - 2474235..2474645 (-) 411 WP_128993162.1 cytidine deaminase -
  ETA19_RS12800 (ETA19_12800) unpK 2474764..2475135 (-) 372 WP_080529555.1 diacylglycerol kinase family protein -
  ETA19_RS12805 (ETA19_12805) ybeY 2475116..2475589 (-) 474 WP_128993163.1 rRNA maturation RNase YbeY -
  ETA19_RS12810 (ETA19_12810) pgpH 2475590..2477725 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=340186 ETA19_RS12780 WP_014477369.1 2472254..2473021(-) (recO) [Bacillus subtilis strain SRCM103837]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=340186 ETA19_RS12780 WP_014477369.1 2472254..2473021(-) (recO) [Bacillus subtilis strain SRCM103837]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996

Multiple sequence alignment