Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ETA19_RS12245 Genome accession   NZ_CP035401
Coordinates   2382365..2383168 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM103837     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2377365..2388168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA19_RS12220 (ETA19_12220) glpQB 2378503..2379234 (-) 732 WP_014480224.1 glycerophosphodiester phosphodiesterase -
  ETA19_RS12225 (ETA19_12225) yqiI 2379313..2379933 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  ETA19_RS12230 (ETA19_12230) - 2379953..2380249 (-) 297 WP_014480225.1 hypothetical protein -
  ETA19_RS12235 (ETA19_12235) - 2380557..2380709 (+) 153 WP_014480226.1 hypothetical protein -
  ETA19_RS12240 (ETA19_12240) yqiG 2380782..2381900 (+) 1119 WP_128993136.1 NADH-dependent flavin oxidoreductase -
  ETA19_RS12245 (ETA19_12245) spo0A 2382365..2383168 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ETA19_RS12250 (ETA19_12250) spoIVB 2383444..2384724 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ETA19_RS12255 (ETA19_12255) recN 2384899..2386629 (-) 1731 WP_128993138.1 DNA repair protein RecN Machinery gene
  ETA19_RS12260 (ETA19_12260) argR 2386666..2387115 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ETA19_RS12265 (ETA19_12265) yqxC 2387213..2388058 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=340175 ETA19_RS12245 WP_003226427.1 2382365..2383168(-) (spo0A) [Bacillus subtilis strain SRCM103837]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=340175 ETA19_RS12245 WP_003226427.1 2382365..2383168(-) (spo0A) [Bacillus subtilis strain SRCM103837]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCAGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCTCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAGTTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment